Information for 3-CCCTCTGCTG (Motif 31)

G T A C G A T C G T A C G C A T G A T C G C A T A C T G A T G C C G A T A C T G
Reverse Opposite:
T G A C G C T A T A C G T G A C C G T A C T A G C G T A C A T G C T A G C A T G
p-value:1e-8
log p-value:-1.959e+01
Information Content per bp:1.689
Number of Target Sequences with motif87.0
Percentage of Target Sequences with motif13.26%
Number of Background Sequences with motif3246.5
Percentage of Background Sequences with motif6.81%
Average Position of motif in Targets49.1 +/- 26.2bp
Average Position of motif in Background50.4 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CCCTCTGCTG--
CCCCCTGCTGTG
 G T A C G A T C G T A C G C A T G A T C G C A T A C T G A T G C C G A T A C T G A C G T A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTGCTG---
GGCCYCCTGCTGDGH
 A C G T A C G T G T A C G A T C G T A C G C A T G A T C G C A T A C T G A T G C C G A T A C T G A C G T A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.69
Offset:-8
Orientation:forward strand
Alignment:--------CCCTCTGCTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C G A T C G T A C G C A T G A T C G C A T A C T G A T G C C G A T A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

ZIC1/MA0696.1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTGCTG--
GACCCCCCGCTGTG
 A C G T A C G T G T A C G A T C G T A C G C A T G A T C G C A T A C T G A T G C C G A T A C T G A C G T A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CCCTCTGCTG----
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T G T A C G A T C G T A C G C A T G A T C G C A T A C T G A T G C C G A T A C T G A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CCCTCTGCTG-
-NAHCAGCTGD
 G T A C G A T C G T A C G C A T G A T C G C A T A C T G A T G C C G A T A C T G A C G T
A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCCTCTGCTG---
GACCCCCCGCTGCGC
 A C G T A C G T G T A C G A T C G T A C G C A T G A T C G C A T A C T G A T G C C G A T A C T G A C G T A C G T A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------CCCTCTGCTG----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C G A T C G T A C G C A T G A T C G C A T A C T G A T G C C G A T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CCCTCTGCTG--
----CAGCTGNT
 G T A C G A T C G T A C G C A T G A T C G C A T A C T G A T G C C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCCTCTGCTG
GCCATCTGTT-
 A C G T G T A C G A T C G T A C G C A T G A T C G C A T A C T G A T G C C G A T A C T G
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T