Information for 6-GAGGGCGCTGTAA (Motif 12)

A C T G C T G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A T C G A C G T G T C A C G T A
Reverse Opposite:
C G A T A C G T C G T A A T G C C G T A A C T G A G T C A C T G A G T C A G T C A G T C A G C T A G T C
p-value:1e-11
log p-value:-2.624e+01
Information Content per bp:1.931
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.8 +/- 36.7bp
Average Position of motif in Background35.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GAGGGCGCTGTAA-----
-AGGACGCTGTAAAGGGA
 A C T G C T G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A T C G A C G T G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GAGGGCGCTGTAA-----
-AAGACGCTGTAAAGCGA
 A C T G C T G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A T C G A C G T G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GAGGGCGCTGTAA-----
-AAGACGCTGTAAAGCGA
 A C T G C T G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A T C G A C G T G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAGGGCGCTGTAA
---GGCGCGCT--
 A C T G C T G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A T C G A C G T G T C A C G T A
A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T

PB0039.1_Klf7_1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGCGCTGTAA-
NNAGGGGCGGGGTNNA
 A C G T A C G T A C T G C T G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A T C G A C G T G T C A C G T A A C G T
G C T A C G A T C T G A C T A G C T A G A C T G A C T G G A T C C A T G A C T G C A T G C A T G A G C T G A T C T C A G C G T A

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGGCGCTGTAA
NNNAAGGGGGCGGGNNN-
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A T C G A C G T G T C A C G T A
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGCGCTGTAA
NNVDGGGYGGGGCYN
 A C G T A C G T A C T G C T G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A T C G A C G T G T C A C G T A
T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A

Klf12/MA0742.1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GAGGGCGCTGTAA
NANAAGGGCGTGGTC-
 A C G T A C G T A C G T A C T G C T G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A T C G A C G T G T C A C G T A
C G T A C G T A C G A T C G T A C G T A C T A G T C A G C T A G G A T C C A T G A C G T A T C G C A T G A G C T G T A C A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCGCTGTAA
RGKGGGCGGAGC--
 A C G T A C T G C T G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A T C G A C G T G T C A C G T A
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGCGCTGTAA
NCGCGGACGTTG---
 A C G T A C G T A C T G C T G A A C T G A C T G A C T G A G T C A C T G G T A C A C G T A T C G A C G T G T C A C G T A
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T A C G T A C G T