Information for 7-TGCCAAAGAGTGACTG (Motif 8)

C G A T A T C G A G T C A G T C C G T A C T G A C G T A T A C G C T G A C T A G C G A T C T A G C G T A A T G C C G A T A C T G
Reverse Opposite:
G T A C C G T A T A C G C G A T A G T C C G T A A G T C G A C T A G T C A C G T A G C T G A C T A C T G C T A G A T G C C G T A
p-value:1e-13
log p-value:-3.039e+01
Information Content per bp:1.695
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif22.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets50.6 +/- 19.1bp
Average Position of motif in Background51.9 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAAGAGTGACTG
GGTGCCAAGT--------
 A C G T A C G T C G A T A T C G A G T C A G T C C G T A C T G A C G T A T A C G C T G A C T A G C G A T C T A G C G T A A T G C C G A T A C T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAAGAGTGACTG
CGTGCCAAG---------
 A C G T A C G T C G A T A T C G A G T C A G T C C G T A C T G A C G T A T A C G C T G A C T A G C G A T C T A G C G T A A T G C C G A T A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGCCAAAGAGTGACTG
TGCCAA----------
 C G A T A T C G A G T C A G T C C G T A C T G A C G T A T A C G C T G A C T A G C G A T C T A G C G T A A T G C C G A T A C T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAAGAGTGACTG
TTGCCAAG---------
 A C G T C G A T A T C G A G T C A G T C C G T A C T G A C G T A T A C G C T G A C T A G C G A T C T A G C G T A A T G C C G A T A C T G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGCCAAAGAGTGACTG
AGCCAATCGG------
 C G A T A T C G A G T C A G T C C G T A C T G A C G T A T A C G C T G A C T A G C G A T C T A G C G T A A T G C C G A T A C T G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAAAGAGTGACTG
NTGCCCANNGGTNA---
 A C G T C G A T A T C G A G T C A G T C C G T A C T G A C G T A T A C G C T G A C T A G C G A T C T A G C G T A A T G C C G A T A C T G
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAAGAGTGACTG
ATGCCAACC--------
 A C G T C G A T A T C G A G T C A G T C C G T A C T G A C G T A T A C G C T G A C T A G C G A T C T A G C G T A A T G C C G A T A C T G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:TGCCAAAGAGTGACTG--
------TGAGTGACAGSC
 C G A T A T C G A G T C A G T C C G T A C T G A C G T A T A C G C T G A C T A G C G A T C T A G C G T A A T G C C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

NFYB/MA0502.1/Jaspar

Match Rank:9
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----TGCCAAAGAGTGACTG
AAATGGACCAATCAG------
 A C G T A C G T A C G T A C G T A C G T C G A T A T C G A G T C A G T C C G T A C T G A C G T A T A C G C T G A C T A G C G A T C T A G C G T A A T G C C G A T A C T G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:TGCCAAAGAGTGACTG-
-----NTGATTGACAGN
 C G A T A T C G A G T C A G T C C G T A C T G A C G T A T A C G C T G A C T A G C G A T C T A G C G T A A T G C C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G