Information for 6-GCMTGAGGWGMAGCTC (Motif 6)

A C T G A G T C T G A C A C G T A T C G C T G A A C T G C T A G C G A T C A T G G T A C C T G A A T C G A T G C A C G T A T G C
Reverse Opposite:
A T C G C G T A A T C G A T G C G A C T C A T G G T A C C G T A A G T C G T A C A G C T A T G C G T C A A C T G T A C G G T A C
p-value:1e-13
log p-value:-3.198e+01
Information Content per bp:1.707
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif13.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets46.1 +/- 29.0bp
Average Position of motif in Background47.9 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A/MA0003.3/Jaspar

Match Rank:1
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GCMTGAGGWGMAGCTC
NGCCTGAGGCN------
 A C G T A C T G A G T C T G A C A C G T A T C G C T G A A C T G C T A G C G A T C A T G G T A C C T G A A T C G A T G C A C G T A T G C
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G A C G T A C G T A C G T A C G T A C G T A C G T

SREBF1/MA0595.1/Jaspar

Match Rank:2
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GCMTGAGGWGMAGCTC
--GTGGGGTGAT----
 A C T G A G T C T G A C A C G T A T C G C T G A A C T G C T A G C G A T C A T G G T A C C T G A A T C G A T G C A C G T A T G C
A C G T A C G T T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:3
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GCMTGAGGWGMAGCTC
TGCCTGAGGCN------
 A C G T A C T G A G T C T G A C A C G T A T C G C T G A A C T G C T A G C G A T C A T G G T A C C T G A A T C G A T G C A C G T A T G C
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.49
Offset:7
Orientation:forward strand
Alignment:GCMTGAGGWGMAGCTC-
-------ATCAAGGTCA
 A C T G A G T C T G A C A C G T A T C G C T G A A C T G C T A G C G A T C A T G G T A C C T G A A T C G A T G C A C G T A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.49
Offset:5
Orientation:forward strand
Alignment:GCMTGAGGWGMAGCTC-
-----AGGTCAAGGTCA
 A C T G A G T C T G A C A C G T A T C G C T G A A C T G C T A G C G A T C A T G G T A C C T G A A T C G A T G C A C G T A T G C A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

SREBF2/MA0596.1/Jaspar

Match Rank:6
Score:0.48
Offset:2
Orientation:forward strand
Alignment:GCMTGAGGWGMAGCTC
--ATGGGGTGAT----
 A C T G A G T C T G A C A C G T A T C G C T G A A C T G C T A G C G A T C A T G G T A C C T G A A T C G A T G C A C G T A T G C
A C G T A C G T T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.48
Offset:12
Orientation:forward strand
Alignment:GCMTGAGGWGMAGCTC--
------------GCTCCG
 A C T G A G T C T G A C A C G T A T C G C T G A A C T G C T A G C G A T C A T G G T A C C T G A A T C G A T G C A C G T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.48
Offset:0
Orientation:forward strand
Alignment:GCMTGAGGWGMAGCTC--
RGGTCADNNAGAGGTCAV
 A C T G A G T C T G A C A C G T A T C G C T G A A C T G C T A G C G A T C A T G G T A C C T G A A T C G A T G C A C G T A T G C A C G T A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.47
Offset:11
Orientation:forward strand
Alignment:GCMTGAGGWGMAGCTC-
-----------AGGTCA
 A C T G A G T C T G A C A C G T A T C G C T G A A C T G C T A G C G A T C A T G G T A C C T G A A T C G A T G C A C G T A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:10
Score:0.47
Offset:-3
Orientation:forward strand
Alignment:---GCMTGAGGWGMAGCTC
ATTGCCTGAGGCAAT----
 A C G T A C G T A C G T A C T G A G T C T G A C A C G T A T C G C T G A A C T G C T A G C G A T C A T G G T A C C T G A A T C G A T G C A C G T A T G C
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T A C G T A C G T A C G T A C G T