Information for 5-AACAATTTCA (Motif 9)

T G C A G C T A G T A C C G T A C T G A C G A T A G C T A C G T T A G C C G T A
Reverse Opposite:
C G A T A T C G G T C A T C G A G C T A G A C T G C A T C A T G C G A T A C G T
p-value:1e-4
log p-value:-1.114e+01
Information Content per bp:1.681
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif15.15%
Number of Background Sequences with motif2038.9
Percentage of Background Sequences with motif4.15%
Average Position of motif in Targets53.6 +/- 27.6bp
Average Position of motif in Background49.2 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0175.1_Sox4_2/Jaspar

Match Rank:1
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----AACAATTTCA--
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A C G T A C G T T G C A G C T A G T A C C G T A C T G A C G A T A G C T A C G T T A G C C G T A A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

Sox11/MA0869.1/Jaspar

Match Rank:2
Score:0.77
Offset:0
Orientation:forward strand
Alignment:AACAATTTCA-----
AACAATTTCAGTGTT
 T G C A G C T A G T A C C G T A C T G A C G A T A G C T A C G T T A G C C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C G T A A G T C C G T A C G T A A C G T A G C T C A G T A G T C C G T A A C T G A C G T A C T G A C G T A G C T

PB0165.1_Sox11_2/Jaspar

Match Rank:3
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----AACAATTTCA
NNCNNAACAATTNT-
 A C G T A C G T A C G T A C G T A C G T T G C A G C T A G T A C C G T A C T G A C G A T A G C T A C G T T A G C C G T A
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AACAATTTCA
NAACAAT----
 A C G T T G C A G C T A G T A C C G T A C T G A C G A T A G C T A C G T T A G C C G T A
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T

SOX4/MA0867.1/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AACAATTTCA-----
GAACAATTGCAGTGTT
 A C G T T G C A G C T A G T A C C G T A C T G A C G A T A G C T A C G T T A G C C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C G T A C T G A A G T C C T G A C T G A A C G T A C G T C A T G A G T C C T G A A C T G A C G T C T A G A G C T C G A T

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AACAATTTCA
AACAAT----
 T G C A G C T A G T A C C G T A C T G A C G A T A G C T A C G T T A G C C G T A
T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:7
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------AACAATTTCA
NNTNANAACAATTNNA
 A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C T A G T A C C G T A C T G A C G A T A G C T A C G T T A G C C G T A
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

SRY/MA0084.1/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AACAATTTCA
GTAAACAAT----
 A C G T A C G T A C G T T G C A G C T A G T A C C G T A C T G A C G A T A G C T A C G T T A G C C G T A
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AACAATTTCA--
ATAAACAATTAAACA
 A C G T A C G T A C G T T G C A G C T A G T A C C G T A C T G A C G A T A G C T A C G T T A G C C G T A A C G T A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

PB0063.1_Sox13_1/Jaspar

Match Rank:10
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----AACAATTTCA-
TTAAGAACAATAAATT
 A C G T A C G T A C G T A C G T A C G T T G C A G C T A G T A C C G T A C T G A C G A T A G C T A C G T T A G C C G T A A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T