Information for 1-CYTTAAAAAAAAARAA (Motif 3)

A G T C A G C T A G C T G A C T C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A C T G A
Reverse Opposite:
A G C T A G C T A G C T A G C T A C G T A C G T C G A T A C G T A C G T A C G T A G C T C G A T C T G A T C G A T C G A T C A G
p-value:1e-8
log p-value:-2.051e+01
Information Content per bp:1.755
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif177.7
Percentage of Background Sequences with motif1.77%
Average Position of motif in Targets41.7 +/- 24.5bp
Average Position of motif in Background40.6 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0182.1_Srf_2/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CYTTAAAAAAAAARAA-
GTTAAAAAAAAAAATTA
A G T C A G C T A G C T G A C T C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A C T G A A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

PB0116.1_Elf3_2/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CYTTAAAAAAAAARAA-
GTTCAAAAAAAAAATTC
A G T C A G C T A G C T G A C T C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A C T G A A C G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CYTTAAAAAAAAARAA
TACTGGAAAAAAAA--
A G T C A G C T A G C T G A C T C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A C T G A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T

PB0093.1_Zfp105_1/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CYTTAAAAAAAAARAA--
---AACAAACAACAAGAG
A G T C A G C T A G C T G A C T C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A C T G A A C G T A C G T
A C G T A C G T A C G T G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

Foxd3/MA0041.1/Jaspar

Match Rank:5
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:CYTTAAAAAAAAARAA--
------AAACAAACATTC
A G T C A G C T A G C T G A C T C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CYTTAAAAAAAAARAA---
--ATAAGAACAAAGGACTA
A G T C A G C T A G C T G A C T C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A C T G A A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CYTTAAAAAAAAARAA---
--AGAAGAACAAAGGACTA
A G T C A G C T A G C T G A C T C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A C T G A A C G T A C G T A C G T
A C G T A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0186.1_Tcf3_2/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CYTTAAAAAAAAARAA
AGCCGAAAAAAAAAT--
A C G T A G T C A G C T A G C T G A C T C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A C T G A
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CYTTAAAAAAAAARAA
ATGCTAAAAATAGAA--
A C G T A G T C A G C T A G C T G A C T C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A C T G A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CYTTAAAAAAAAARAA--
NNCCTGNAAAAAAAAAAAAA
A C G T A C G T A G T C A G C T A G C T G A C T C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A C T G A A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A