Information for 2-AMMAWCTTKGAGA (Motif 6)

C G T A G T A C G T C A C T G A C G T A A G T C A C G T A C G T C A T G A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C G T A C C G T A C G T A C T A G C G A T A G C T A C G T A C T G A C G T
p-value:1e-9
log p-value:-2.284e+01
Information Content per bp:1.872
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.8 +/- 31.3bp
Average Position of motif in Background54.2 +/- 36.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0161.1_Rxra_2/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AMMAWCTTKGAGA
NNNNCAACCTTCGNGA
 A C G T A C G T A C G T C G T A G T A C G T C A C T G A C G T A A G T C A C G T A C G T C A T G A C T G C G T A A C T G C G T A
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AMMAWCTTKGAGA------
--CTACTTGGATACGGAAT
 C G T A G T A C G T C A C T G A C G T A A G T C A C G T A C G T C A T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AMMAWCTTKGAGA-
----CCTTTGATGT
 C G T A G T A C G T C A C T G A C G T A A G T C A C G T A C G T C A T G A C T G C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AMMAWCTTKGAGA
-CAAGCTT-----
 C G T A G T A C G T C A C T G A C G T A A G T C A C G T A C G T C A T G A C T G C G T A A C T G C G T A
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HSF2/MA0770.1/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AMMAWCTTKGAGA-
-GAANGTTCTAGAA
 C G T A G T A C G T C A C T G A C G T A A G T C A C G T A C G T C A T G A C T G C G T A A C T G C G T A A C G T
A C G T T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AMMAWCTTKGAGA-
TAGAANVTTCTAGAA
 A C G T C G T A G T A C G T C A C T G A C G T A A G T C A C G T A C G T C A T G A C T G C G T A A C T G C G T A A C G T
G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:7
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:AMMAWCTTKGAGA---
----GGTTAGAGACCT
 C G T A G T A C G T C A C T G A C G T A A G T C A C G T A C G T C A T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:8
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:AMMAWCTTKGAGA---
------TTTGAAACCG
 C G T A G T A C G T C A C T G A C G T A A G T C A C G T A C G T C A T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

HSF1/MA0486.2/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AMMAWCTTKGAGA-
-GAACGTTCTAGAA
 C G T A G T A C G T C A C T G A C G T A A G T C A C G T A C G T C A T G A C T G C G T A A C T G C G T A A C G T
A C G T C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A

REST/MA0138.2/Jaspar

Match Rank:10
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---AMMAWCTTKGAGA-----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T C G T A G T A C G T C A C T G A C G T A A G T C A C G T A C G T C A T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C