Information for 3-ACAGHATAGTTACAGA (Motif 4)

C G T A A G T C C G T A C T A G G A T C C T G A C A G T C G T A C T A G A C G T A C G T C G T A T A G C C G T A C T A G C G T A
Reverse Opposite:
A C G T A G T C C G A T A T C G C G A T C G T A G T C A A G T C A C G T G T C A A G C T C A T G A G T C A C G T A C T G A C G T
p-value:1e-12
log p-value:-2.803e+01
Information Content per bp:1.788
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets77.6 +/- 7.8bp
Average Position of motif in Background56.4 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0023.1_Dlx4/Jaspar

Match Rank:1
Score:0.52
Offset:0
Orientation:forward strand
Alignment:ACAGHATAGTTACAGA-
GCGCTATAATTACCGAC
 C G T A A G T C C G T A C T A G G A T C C T G A C A G T C G T A C T A G A C G T A C G T C G T A T A G C C G T A C T A G C G T A A C G T
A C G T G T A C T C A G T G A C C A G T C T G A G A C T C G T A C G T A C G A T A C G T C T G A G T A C G T A C T A C G G C T A G T A C

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.52
Offset:1
Orientation:forward strand
Alignment:ACAGHATAGTTACAGA
-TACCCTAGTTACCGA
 C G T A A G T C C G T A C T A G G A T C C T G A C A G T C G T A C T A G A C G T A C G T C G T A T A G C C G T A C T A G C G T A
A C G T G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

PB0073.1_Sox7_1/Jaspar

Match Rank:3
Score:0.51
Offset:-8
Orientation:forward strand
Alignment:--------ACAGHATAGTTACAGA
AATAAAGAACAATAGAATTTCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C T A G G A T C C T G A C A G T C G T A C T A G A C G T A C G T C G T A T A G C C G T A C T A G C G T A
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:4
Score:0.51
Offset:4
Orientation:forward strand
Alignment:ACAGHATAGTTACAGA
----ACTAGTTAAC--
 C G T A A G T C C G T A C T A G G A T C C T G A C A G T C G T A C T A G A C G T A C G T C G T A T A G C C G T A C T A G C G T A
A C G T A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T

PH0022.1_Dlx3/Jaspar

Match Rank:5
Score:0.50
Offset:0
Orientation:forward strand
Alignment:ACAGHATAGTTACAGA-
TCGCGATAATTACCGAC
 C G T A A G T C C G T A C T A G G A T C C T G A C A G T C G T A C T A G A C G T A C G T C G T A T A G C C G T A C T A G C G T A A C G T
A C G T G T A C T C A G T G A C C A G T C T G A A G C T C G T A C G T A A C G T C A G T C T G A A G T C G T A C T A C G G C T A G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-ACAGHATAGTTACAGA
CACAGN-----------
 A C G T C G T A A G T C C G T A C T A G G A T C C T G A C A G T C G T A C T A G A C G T A C G T C G T A T A G C C G T A C T A G C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:7
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGHATAGTTACAGA
TCNNTTTACAGCGNNNT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C T A G G A T C C T G A C A G T C G T A C T A G A C G T A C G T C G T A T A G C C G T A C T A G C G T A
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGHATAGTTACAGA
TCNNTTTACAGCGNNNT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C T A G G A T C C T G A C A G T C G T A C T A G A C G T A C G T C G T A T A G C C G T A C T A G C G T A
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:9
Score:0.49
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGHATAGTTACAGA
TCNCTTTACAGCGNNNT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C T A G G A T C C T G A C A G T C G T A C T A G A C G T A C G T C G T A T A G C C G T A C T A G C G T A
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:10
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:ACAGHATAGTTACAGA---
-------GGTTAGAGACCT
 C G T A A G T C C G T A C T A G G A T C C T G A C A G T C G T A C T A G A C G T A C G T C G T A T A G C C G T A C T A G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T