Information for 4-CGGAGGCTGA (Motif 19)

A G T C C T A G A C T G C G T A A C T G A C T G A G T C C G A T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C T G A G T C A G T C C G A T A G T C A G T C T C A G
p-value:1e-7
log p-value:-1.729e+01
Information Content per bp:1.884
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif91.2
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets60.8 +/- 19.2bp
Average Position of motif in Background48.5 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGGAGGCTGA--
--GAGSCCGAGC
 A G T C C T A G A C T G C G T A A C T G A C T G A G T C C G A T A C T G C G T A A C G T A C G T
A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CGGAGGCTGA
--TWGTCTGV
 A G T C C T A G A C T G C G T A A C T G A C T G A G T C C G A T A C T G C G T A
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CGGAGGCTGA
----NGCTN-
 A G T C C T A G A C T G C G T A A C T G A C T G A G T C C G A T A C T G C G T A
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CGGAGGCTGA----
----TGCTGACTCA
 A G T C C T A G A C T G C G T A A C T G A C T G A G T C C G A T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

POL002.1_INR/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CGGAGGCTGA
--NNNANTGA
 A G T C C T A G A C T G C G T A A C T G A C T G A G T C C G A T A C T G C G T A
A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A

HINFP/MA0131.2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CGGAGGCTGA
NCGCGGACGTTG-
 A C G T A C G T A C G T A G T C C T A G A C T G C G T A A C T G A C T G A G T C C G A T A C T G C G T A
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T

PB0010.1_Egr1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CGGAGGCTGA
ANTGCGGGGGCGGN
 A C G T A C G T A C G T A C G T A G T C C T A G A C T G C G T A A C T G A C T G A G T C C G A T A C T G C G T A
G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGGAGGCTGA-
AATTTGCTGAC
 A G T C C T A G A C T G C G T A A C T G A C T G A G T C C G A T A C T G C G T A A C G T
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CGGAGGCTGA
AGCCTCAGGCA--
 A C G T A C G T A C G T A G T C C T A G A C T G C G T A A C T G A C T G A G T C C G A T A C T G C G T A
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CGGAGGCTGA
TGCCTGAGGCN--
 A C G T A C G T A C G T A G T C C T A G A C T G C G T A A C T G A C T G A G T C C G A T A C T G C G T A
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T