Information for 7-RTTTASTTGG (Motif 15)

C T A G A C G T C G A T A G C T C G T A T A G C A C G T C G A T A C T G A T C G
Reverse Opposite:
A T G C A G T C G C T A C G T A A T C G A C G T C T G A C G T A G T C A A G T C
p-value:1e-5
log p-value:-1.203e+01
Information Content per bp:1.776
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.86%
Number of Background Sequences with motif278.3
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets42.9 +/- 27.1bp
Average Position of motif in Background51.1 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSX2/MA0708.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:RTTTASTTGG
--NTAATTGG
 C T A G A C G T C G A T A G C T C G T A T A G C A C G T C G A T A C T G A T C G
A C G T A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:RTTTASTTGG-
-TTTAATTGCN
 C T A G A C G T C G A T A G C T C G T A T A G C A C G T C G A T A C T G A T C G A C G T
A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

MF0005.1_Forkhead_class/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RTTTASTTGG
TGTTTATTT--
 A C G T C T A G A C G T C G A T A G C T C G T A T A G C A C G T C G A T A C T G A T C G
G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:RTTTASTTGG
GTTAACTAGN
 C T A G A C G T C G A T A G C T C G T A T A G C A C G T C G A T A C T G A T C G
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---RTTTASTTGG---
GTAGGTCACTGGGTCA
 A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A T A G C A C G T C G A T A C T G A T C G A C G T A C G T A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RTTTASTTGG
TTTTATKRGG
 C T A G A C G T C G A T A G C T C G T A T A G C A C G T C G A T A C T G A T C G
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

Hmx1/MA0896.1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---RTTTASTTGG----
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A T A G C A C G T C G A T A C T G A T C G A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---RTTTASTTGG----
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A T A G C A C G T C G A T A C T G A T C G A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-RTTTASTTGG-----
NNNTTAATTGGTTTTT
 A C G T C T A G A C G T C G A T A G C T C G T A T A G C A C G T C G A T A C T G A T C G A C G T A C G T A C G T A C G T A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

FOXP2/MA0593.1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---RTTTASTTGG
TNTGTTTACTT--
 A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A T A G C A C G T C G A T A C T G A T C G
G A C T A G C T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C A T G A C T A C G T A C G T