Information for 4-AAATATTGGT (Motif 13)

C T G A C G T A C G T A A C G T C G T A A G C T A C G T C T A G T A C G C G A T
Reverse Opposite:
C G T A A T G C A G T C C G T A C T G A A C G T G T C A C G A T C G A T A G C T
p-value:1e-8
log p-value:-2.001e+01
Information Content per bp:1.848
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif4.01%
Number of Background Sequences with motif257.3
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets52.8 +/- 30.0bp
Average Position of motif in Background50.1 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-AAATATTGGT---
CTAATATTGCTAAA
 A C G T C T G A C G T A C G T A A C G T C G T A A G C T A C G T C T A G T A C G C G A T A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-AAATATTGGT---
CTAATATTGCTAAA
 A C G T C T G A C G T A C G T A A C G T C G T A A G C T A C G T C T A G T A C G C G A T A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0063.1_Sox13_1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AAATATTGGT-----
AANTTATTGTTCTNNA
 A C G T C T G A C G T A C G T A A C G T C G T A A G C T A C G T C T A G T A C G C G A T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AAATATTGGT
AATTATT---
 C T G A C G T A C G T A A C G T C G T A A G C T A C G T C T A G T A C G C G A T
G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:AAATATTGGT-
----ATTGTTA
 C T G A C G T A C G T A A C G T C G T A A G C T A C G T C T A G T A C G C G A T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

PB0074.1_Sox8_1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAATATTGGT-----
GTATCTATTGTTCTTTA
 A C G T A C G T C T G A C G T A C G T A A C G T C G T A A G C T A C G T C T A G T A C G C G A T A C G T A C G T A C G T A C G T A C G T
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AAATATTGGT
GAATATTCAT
 C T G A C G T A C G T A A C G T C G T A A G C T A C G T C T A G T A C G C G A T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

PB0072.1_Sox5_1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAATATTGGT-----
NNTTTATTGTTCTNNN
 A C G T C T G A C G T A C G T A A C G T C G T A A G C T A C G T C T A G T A C G C G A T A C G T A C G T A C G T A C G T A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AAATATTGGT----
----ATTGATTYND
 C T G A C G T A C G T A A C G T C G T A A G C T A C G T C T A G T A C G C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAATATTGGT-----
GGAAAAATTGTTAGGAA
 A C G T A C G T C T G A C G T A C G T A A C G T C G T A A G C T A C G T C T A G T A C G C G A T A C G T A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A