Information for 3-CTAAAAAAGC (Motif 12)

A G T C A C G T T G C A C T G A C T G A C G T A C G T A C T G A A C T G A G T C
Reverse Opposite:
A C T G G T A C A G C T C G A T C G A T A G C T A G C T A C G T C G T A A C T G
p-value:1e-8
log p-value:-2.018e+01
Information Content per bp:1.849
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif2.94%
Number of Background Sequences with motif113.7
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets48.0 +/- 28.6bp
Average Position of motif in Background53.2 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTAAAAAAGC
GNCTATAAAAGG
 A C G T A C G T A G T C A C G T T G C A C T G A C T G A C G T A C G T A C T G A A C T G A G T C
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTAAAAAAGC
KCCAAAAATAGC
 A C G T A C G T A G T C A C G T T G C A C T G A C T G A C G T A C G T A C T G A A C T G A G T C
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTAAAAAAGC-----
GTATAAAAGGCGGGG
 A G T C A C G T T G C A C T G A C T G A C G T A C G T A C T G A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTAAAAAAGC-----
GTATAAAAGGCGGGG
 A G T C A C G T T G C A C T G A C T G A C G T A C G T A C T G A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTAAAAAAGC
DCYAAAAATAGM
 A C G T A C G T A G T C A C G T T G C A C T G A C T G A C G T A C G T A C T G A A C T G A G T C
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTAAAAAAGC
CCAAAAATAG-
 A C G T A G T C A C G T T G C A C T G A C T G A C G T A C G T A C T G A A C T G A G T C
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CTAAAAAAGC-
ATGCTAAAAATAGAA
 A C G T A C G T A C G T A C G T A G T C A C G T T G C A C T G A C T G A C G T A C G T A C T G A A C T G A G T C A C G T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CTAAAAAAGC
TACTGGAAAAAAAA
 A C G T A C G T A C G T A C G T A G T C A C G T T G C A C T G A C T G A C G T A C G T A C T G A A C T G A G T C
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTAAAAAAGC
GCTAAAAATAGC
 A C G T A C G T A G T C A C G T T G C A C T G A C T G A C G T A C G T A C T G A A C T G A G T C
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTAAAAAAGC
CCYMATAAAA-
 A C G T A G T C A C G T T G C A C T G A C T G A C G T A C G T A C T G A A C T G A G T C
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T