Information for 5-AGCTCCTAAC (Motif 13)

C G T A A C T G A G T C A C G T A G T C A G T C A C G T C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T C G T A A C T G A C T G C G T A A C T G A G T C A C G T
p-value:1e-5
log p-value:-1.370e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.0 +/- 31.8bp
Average Position of motif in Background68.6 +/- 11.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGCTCCTAAC
-GCTCCG---
 C G T A A C T G A G T C A C G T A G T C A G T C A C G T C G T A C G T A A G T C
A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGCTCCTAAC----
AAAGCTCGTAAAATTT
 A C G T A C G T C G T A A C T G A G T C A C G T A G T C A G T C A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGCTCCTAAC----
AAACCTCGTAAAATTT
 A C G T A C G T C G T A A C T G A G T C A C G T A G T C A G T C A C G T C G T A C G T A A G T C A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGCTCCTAAC--
-GCTCGTAAAAA
 C G T A A C T G A G T C A C G T A G T C A G T C A C G T C G T A C G T A A G T C A C G T A C G T
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PB0115.1_Ehf_2/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AGCTCCTAAC--
TAGTATTTCCGATCTT
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C A G T C A C G T C G T A C G T A A G T C A C G T A C G T
C G A T C G T A T C A G C A G T C T G A A C G T C G A T C G A T G A T C G A T C A C T G G C T A G C A T T A G C C G A T G C A T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGCTCCTAAC
NGCTN-----
 C G T A A C T G A G T C A C G T A G T C A G T C A C G T C G T A C G T A A G T C
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGCTCCTAAC---
ACATGCTACCTAATAC
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C A G T C A C G T C G T A C G T A A G T C A C G T A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

PB0155.1_Osr2_2/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGCTCCTAAC---
ACTTGCTACCTACACC
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C A G T C A C G T C G T A C G T A A G T C A C G T A C G T A C G T
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AGCTCCTAAC--
AGATGCTRCTRCCHT
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C A G T C A C G T C G T A C G T A A G T C A C G T A C G T
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

Ascl2/MA0816.1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AGCTCCTAAC
AGCAGCTGCT---
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C A G T C A C G T C G T A C G T A A G T C
T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T