Information for 4-TTAGCTCAGG (Motif 12)

A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C T G C G T A A C T G A G T C A C G T C G T A C G T A
p-value:1e-6
log p-value:-1.578e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.7 +/- 28.2bp
Average Position of motif in Background74.6 +/- 10.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0045.1_Hoxa1/Jaspar

Match Rank:1
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------TTAGCTCAGG
ACGGTAATTAGCTCAG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C T G
T C G A T G A C C T A G A C T G A G C T G T C A C G T A A C G T A C G T C T G A T A C G A G T C G A C T G A T C C T G A C T A G A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TTAGCTCAGG
TATAAGTAGGTCAA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C T G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T

PH0103.1_Meox1/Jaspar

Match Rank:3
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------TTAGCTCAGG
GAGGTAATTACCTCAG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C T G
T C A G T G C A C A T G C A T G G A C T T G C A G C T A C A G T A C G T C T G A A T G C G T A C G A C T A G T C C G T A C T A G A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TTAGCTCAGG
AAYTAGGTCA--
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C T G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TTAGCTCAGG
---GCTCCG-
 A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C T G
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T

PH0081.1_Pdx1/Jaspar

Match Rank:6
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------TTAGCTCAGG
AAGGTAATTAGCTCAT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C T G
T G C A T G C A C T A G A T C G G A C T T G C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T T A G C C G T A C A G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTAGCTCAGG
TRAGGTCA--
 A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

Gata4/MA0482.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TTAGCTCAGG
TCTTATCTCCC-
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C T G
A G C T A T G C A G C T A C G T G T C A A C G T A G T C C G A T A T G C G A T C A G T C A C G T

GATA3/MA0037.2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTAGCTCAGG
TCTTATCT----
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C T G
A G C T A G T C A C G T A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T

PH0049.1_Hoxa2/Jaspar

Match Rank:10
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------TTAGCTCAGG
AAGGTAATTAGCTCAT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A G T C C G T A A C T G A C T G
C T G A T G C A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A T A C G G A T C G A C T G T A C C G T A C G A T A C G T