Information for 12-GAGCATTCAAAGC (Motif 13)

A C T G C G T A A T C G G T A C G T C A C G A T A C G T T G A C G T C A C T G A G T C A A C T G A G T C
Reverse Opposite:
T C A G G T A C A C G T A G C T A C G T A C T G G T C A C G T A A C G T A C T G A T G C A C G T G T A C
p-value:1e-11
log p-value:-2.708e+01
Information Content per bp:1.705
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif105.9
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets34.4 +/- 28.7bp
Average Position of motif in Background52.0 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GAGCATTCAAAGC
---NATTCAAAT-
 A C T G C G T A A T C G G T A C G T C A C G A T A C G T T G A C G T C A C T G A G T C A A C T G A G T C
A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAGCATTCAAAGC
-CGGTTTCAAA--
 A C T G C G T A A T C G G T A C G T C A C G A T A C G T T G A C G T C A C T G A G T C A A C T G A G T C
A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGCATTCAAAGC--
AGAGCCATAAAATTCG
 A C G T A C T G C G T A A T C G G T A C G T C A C G A T A C G T T G A C G T C A C T G A G T C A A C T G A G T C A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GAGCATTCAAAGC
---ACATCAAAGG
 A C T G C G T A A T C G G T A C G T C A C G A T A C G T T G A C G T C A C T G A G T C A A C T G A G T C
A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAGCATTCAAAGC
--GCATTCCAGN-
 A C T G C G T A A T C G G T A C G T C A C G A T A C G T T G A C G T C A C T G A G T C A A C T G A G T C
A C G T A C G T C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G A C G T

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGCATTCAAAGC
CCATCAATCAAA--
 A C G T A C T G C G T A A T C G G T A C G T C A C G A T A C G T T G A C G T C A C T G A G T C A A C T G A G T C
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGCATTCAAAGC--
ACAAGCAATTAATGAAT
 A C G T A C G T A C T G C G T A A T C G G T A C G T C A C G A T A C G T T G A C G T C A C T G A G T C A A C T G A G T C A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGCATTCAAAGC--
ACAAGCAATTAATGAAT
 A C G T A C G T A C T G C G T A A T C G G T A C G T C A C G A T A C G T T G A C G T C A C T G A G T C A A C T G A G T C A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAGCATTCAAAGC
-CACATTCCAT--
 A C T G C G T A A T C G G T A C G T C A C G A T A C G T T G A C G T C A C T G A G T C A A C T G A G T C
A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T A C G T A C G T

TEAD3/MA0808.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAGCATTCAAAGC
--ACATTCCA---
 A C T G C G T A A T C G G T A C G T C A C G A T A C G T T G A C G T C A C T G A G T C A A C T G A G T C
A C G T A C G T C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A A C G T A C G T A C G T