Information for 10-CTGTCCTCGCAGC (Motif 11)

A G T C C G A T A C T G A C G T A G T C A G T C A G C T A T G C A C T G A G T C G T C A T A C G G T A C
Reverse Opposite:
A C T G A T G C A C G T A C T G G T A C A T C G C T G A A C T G C T A G G T C A G T A C C G T A C T A G
p-value:1e-12
log p-value:-2.949e+01
Information Content per bp:1.832
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif9.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets40.6 +/- 16.6bp
Average Position of motif in Background44.5 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTGTCCTCGCAGC
CTGTTCCTGG---
 A G T C C G A T A C T G A C G T A G T C A G T C A G C T A T G C A C T G A G T C G T C A T A C G G T A C
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTGTCCTCGCAGC
-TGACCTYA----
 A G T C C G A T A C T G A C G T A G T C A G T C A G C T A T G C A C T G A G T C G T C A T A C G G T A C
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTGTCCTCGCAGC-
TGTTKCCTAGCAACM
 A C G T A G T C C G A T A C T G A C G T A G T C A G T C A G C T A T G C A C T G A G T C G T C A T A C G G T A C A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

GCM1/MA0646.1/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTGTCCTCGCAGC
--GTACCCGCATN
 A G T C C G A T A C T G A C G T A G T C A G T C A G C T A T G C A C T G A G T C G T C A T A C G G T A C
A C G T A C G T T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CTGTCCTCGCAGC
-------CACAGN
 A G T C C G A T A C T G A C G T A G T C A G T C A G C T A T G C A C T G A G T C G T C A T A C G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCTCGCAGC
BNTGDCCTTG----
 A C G T A G T C C G A T A C T G A C G T A G T C A G T C A G C T A T G C A C T G A G T C G T C A T A C G G T A C
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T

STAT3/MA0144.2/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CTGTCCTCGCAGC
-TTTCCCAGAAN-
 A G T C C G A T A C T G A C G T A G T C A G T C A G C T A T G C A C T G A G T C G T C A T A C G G T A C
A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G A C G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CTGTCCTCGCAGC--
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C G T A G T C A G T C A G C T A T G C A C T G A G T C G T C A T A C G G T A C A C G T A C G T
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CTGTCCTCGCAGC--
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C G T A G T C A G T C A G C T A T G C A C T G A G T C G T C A T A C G G T A C A C G T A C G T
G A C T G A C T A G C T A G C T A G C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G C G A T C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CTGTCCTCGCAGC
----CTTGGCAA-
 A G T C C G A T A C T G A C G T A G T C A G T C A G C T A T G C A C T G A G T C G T C A T A C G G T A C
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T