Information for 1-CTGTCCTASA (Motif 7)

A G T C A C G T A C T G A C G T T A G C A G T C A G C T T G C A A T G C C G T A
Reverse Opposite:
G C A T T A C G A C G T C T G A C T A G A T C G C G T A G T A C C G T A C T A G
p-value:1e-10
log p-value:-2.477e+01
Information Content per bp:1.691
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif12.39%
Number of Background Sequences with motif499.9
Percentage of Background Sequences with motif1.04%
Average Position of motif in Targets57.4 +/- 23.3bp
Average Position of motif in Background50.7 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CTGTCCTASA
CTGTTCCTGG
 A G T C A C G T A C T G A C G T T A G C A G T C A G C T T G C A A T G C C G T A
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTGTCCTASA
GCTGTG-----
 A C G T A G T C A C G T A C T G A C G T T A G C A G T C A G C T T G C A A T G C C G T A
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTGTCCTASA
CCATTGTTTT---
 A C G T A C G T A C G T A G T C A C G T A C T G A C G T T A G C A G T C A G C T T G C A A T G C C G T A
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTGTCCTASA
CCATTGTTNY---
 A C G T A C G T A C G T A G T C A C G T A C T G A C G T T A G C A G T C A G C T T G C A A T G C C G T A
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTGTCCTASA----
TTGACCTANTTATN
 A G T C A C G T A C T G A C G T T A G C A G T C A G C T T G C A A T G C C G T A A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------CTGTCCTASA
NNNNTTGTGTGCTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T T A G C A G T C A G C T T G C A A T G C C G T A
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGTCCTASA-
-TGACCTARTT
 A G T C A C G T A C T G A C G T T A G C A G T C A G C T T G C A A T G C C G T A A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTGTCCTASA
CCWTTGTYYB---
 A C G T A C G T A C G T A G T C A C G T A C T G A C G T T A G C A G T C A G C T T G C A A T G C C G T A
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTGTCCTASA
CTTTGT------
 A C G T A C G T A G T C A C G T A C T G A C G T T A G C A G T C A G C T T G C A A T G C C G T A
A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTGTCCTASA
CCTTTGTTTT---
 A C G T A C G T A C G T A G T C A C G T A C T G A C G T T A G C A G T C A G C T T G C A A T G C C G T A
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T