Information for 5-GGCAGDCAGDCAG (Motif 8)

A C T G C T A G A G T C G T C A A C T G C A T G A G T C C G T A A C T G C A T G G T A C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G G T A C A G T C A C G T A C T G G A T C A G T C A C G T A C T G A G T C G T A C
p-value:1e-4
log p-value:-1.117e+01
Information Content per bp:1.810
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif40.5
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets27.4 +/- 15.2bp
Average Position of motif in Background46.4 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGDCAGDCAG
TGGCAGNCTGCCAG
 A C G T A C T G C T A G A G T C G T C A A C T G C A T G A G T C C G T A A C T G C A T G G T A C C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGCAGDCAGDCAG
GSCTGTCACTCA-
 A C T G C T A G A G T C G T C A A C T G C A T G A G T C C G T A A C T G C A T G G T A C C G T A A C T G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGCAGDCAGDCAG
AGGTGNCAGACAG
 A C T G C T A G A G T C G T C A A C T G C A T G A G T C C G T A A C T G C A T G G T A C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GGCAGDCAGDCAG
-CCAGACAG----
 A C T G C T A G A G T C G T C A A C T G C A T G A G T C C G T A A C T G C A T G G T A C C G T A A C T G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGCAGDCAGDCAG
-SCTGTCAVTCAV
 A C T G C T A G A G T C G T C A A C T G C A T G A G T C C G T A A C T G C A T G G T A C C G T A A C T G
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:6
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GGCAGDCAGDCAG--
-----ACAGGAAGTG
 A C T G C T A G A G T C G T C A A C T G C A T G A G T C C G T A A C T G C A T G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGCAGDCAGDCAG---
-SCAGYCADGCATGAC
 A C T G C T A G A G T C G T C A A C T G C A T G A G T C C G T A A C T G C A T G G T A C C G T A A C T G A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGCAGDCAGDCAG
-NCTGTCAATCAN
 A C T G C T A G A G T C G T C A A C T G C A T G A G T C C G T A A C T G C A T G G T A C C G T A A C T G
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGCAGDCAGDCAG
-CCAGACRSVB--
 A C T G C T A G A G T C G T C A A C T G C A T G A G T C C G T A A C T G C A T G G T A C C G T A A C T G
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GGCAGDCAGDCAG-
----AACAGGAAGT
 A C T G C T A G A G T C G T C A A C T G C A T G A G T C C G T A A C T G C A T G G T A C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T