Information for 6-GATGTTAATGCGG (Motif 12)

A C T G C T G A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C T A G A G T C A C T G A C T G
Reverse Opposite:
A G T C A G T C A C T G A G T C C G T A A C G T A C G T C G T A C G T A A G T C C G T A A G C T A G T C
p-value:1e-2
log p-value:-6.784e+00
Information Content per bp:1.940
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif1.85%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets82.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GATGTTAATGCGG
AGGTGTTAAT----
 A C G T A C T G C T G A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C T A G A G T C A C T G A C T G
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GATGTTAATGCGG
TATGCWAATBAV-
 A C T G C T G A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C T A G A G T C A C T G A C T G
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GATGTTAATGCGG----
GACGATAATGAGCTTGC
 A C T G C T G A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C T A G A G T C A C T G A C T G A C G T A C G T A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GATGTTAATGCGG
WATGCAAATGAG-
 A C T G C T G A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C T A G A G T C A C T G A C T G
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GATGTTAATGCGG
AAGGTGTKAA-----
 A C G T A C G T A C T G C T G A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C T A G A G T C A C T G A C T G
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GATGTTAATGCGG
-ATATTAATTAA-
 A C T G C T G A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C T A G A G T C A C T G A C T G
A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GATGTTAATGCGG
NNNTTTNTAATACNG
 A C G T A C G T A C T G C T G A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C T A G A G T C A C T G A C T G
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GATGTTAATGCGG
----TTAATCCG-
 A C T G C T G A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C T A G A G T C A C T G A C T G
A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GATGTTAATGCGG
----TTAATCCT-
 A C T G C T G A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C T A G A G T C A C T G A C T G
A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GATGTTAATGCGG
---GKTAATGR--
 A C T G C T G A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C T A G A G T C A C T G A C T G
A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T