Information for 5-TGCCAATCGG (Motif 28)

A C G T A C T G A G T C A G T C G C T A C G T A A G C T T G A C C A T G A C T G
Reverse Opposite:
A G T C G T A C A C T G C T G A A C G T C G A T A C T G A C T G A G T C C G T A
p-value:1e-8
log p-value:-1.906e+01
Information Content per bp:1.866
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif17.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets42.9 +/- 25.3bp
Average Position of motif in Background50.3 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:TGCCAATCGG
AGCCAATCGG
 A C G T A C T G A G T C A G T C G C T A C G T A A G C T T G A C C A T G A C T G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATCGG
GGTGCCAAGT--
 A C G T A C G T A C G T A C T G A G T C A G T C G C T A C G T A A G C T T G A C C A T G A C T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--TGCCAATCGG
CGTGCCAAG---
 A C G T A C G T A C G T A C T G A G T C A G T C G C T A C G T A A G C T T G A C C A T G A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGCCAATCGG
TGCCAA----
 A C G T A C T G A G T C A G T C G C T A C G T A A G C T T G A C C A T G A C T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TGCCAATCGG
ATGCCAACC--
 A C G T A C G T A C T G A G T C A G T C G C T A C G T A A G C T T G A C C A T G A C T G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TGCCAATCGG--
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C G C T A C G T A A G C T T G A C C A T G A C T G A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

NFYB/MA0502.1/Jaspar

Match Rank:7
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----TGCCAATCGG
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C G C T A C G T A A G C T T G A C C A T G A C T G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGCCAATCGG
ATGCCCACC--
 A C G T A C G T A C T G A G T C A G T C G C T A C G T A A G C T T G A C C A T G A C T G
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGCCAATCGG
TTGCCAAG---
 A C G T A C G T A C T G A G T C A G T C G C T A C G T A A G C T T G A C C A T G A C T G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAATCGG---
NTGCCCTTGGGCGN
 A C G T A C G T A C T G A G T C A G T C G C T A C G T A A G C T T G A C C A T G A C T G A C G T A C G T A C G T
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G