Information for 14-CCATAACCTA (Motif 43)

A G T C A G T C C G T A A C G T C G T A C G T A A G T C A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A C T A G A C T G A C G T C G A T C G T A A C G T A C T G A C T G
p-value:1e-6
log p-value:-1.458e+01
Information Content per bp:1.937
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif9.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets86.2 +/- 10.3bp
Average Position of motif in Background47.4 +/- 15.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCATAACCTA---
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A A G T C A G T C A C G T C G T A A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0176.1_Sox5_2/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCATAACCTA---
TATCATAATTAAGGA
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A A G T C A G T C A C G T C G T A A C G T A C G T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCATAACCTA
TGACCTTGACCT-
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A A G T C A G T C A C G T C G T A
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCATAACCTA
TGACCTTGACCT-
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A A G T C A G T C A C G T C G T A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCATAACCTA
YCATTAMC--
 A G T C A G T C C G T A A C G T C G T A C G T A A G T C A G T C A C G T C G T A
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCATAACCTA
GGCCATTAAC--
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A A G T C A G T C A C G T C G T A
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T

TEF/MA0843.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCATAACCTA---
-TATTACGTAACA
 A G T C A G T C C G T A A C G T C G T A C G T A A G T C A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A G C T T C G A G C A T C G A T C T G A G A T C C T A G A G C T G C T A C T G A A G T C T G C A

Crem/MA0609.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCATAACCTA-
-TATGACGTAA
 A G T C A G T C C G T A A C G T C G T A C G T A A G T C A G T C A C G T C G T A A C G T
A C G T A C G T C T G A A C G T A C T G C G T A A G T C A C T G A C G T G T C A C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCATAACCTA---
---TGACCTARTT
 A G T C A G T C C G T A A C G T C G T A C G T A A G T C A G T C A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCATAACCTA
GGCCATAAATCA
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A A G T C A G T C A C G T C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A