Information for 13-AGGCCTTGGT (Motif 40)

C G T A A T C G A C T G A G T C G T A C A C G T A C G T A C T G A C T G A G C T
Reverse Opposite:
C T G A A G T C A G T C G T C A T G C A C A T G A C T G A G T C T A G C C G A T
p-value:1e-7
log p-value:-1.815e+01
Information Content per bp:1.857
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif255.1
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets47.3 +/- 28.9bp
Average Position of motif in Background51.4 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:AGGCCTTGGT
AGGCCTNG--
 C G T A A T C G A C T G A G T C G T A C A C G T A C G T A C T G A C T G A G C T
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-AGGCCTTGGT---
CAGGCCNNGGCCNN
 A C G T C G T A A T C G A C T G A G T C G T A C A C G T A C G T A C T G A C T G A G C T A C G T A C G T A C G T
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGGCCTTGGT
AGGCCTAG--
 C G T A A T C G A C T G A G T C G T A C A C G T A C G T A C T G A C T G A G C T
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGGCCTTGGT
TGACCTTGAN
 C G T A A T C G A C T G A G T C G T A C A C G T A C G T A C T G A C T G A G C T
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGGCCTTGGT
BNTGDCCTTG--
 A C G T A C G T C G T A A T C G A C T G A G T C G T A C A C G T A C G T A C T G A C T G A G C T
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGGCCTTGGT
TGACCTTGAV
 C G T A A T C G A C T G A G T C G T A C A C G T A C G T A C T G A C T G A G C T
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

Klf12/MA0742.1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AGGCCTTGGT-
NANAAGGGCGTGGTC
 A C G T A C G T A C G T A C G T C G T A A T C G A C T G A G T C G T A C A C G T A C G T A C T G A C T G A G C T A C G T
C G T A C G T A C G A T C G T A C G T A C T A G T C A G C T A G G A T C C A T G A C G T A T C G C A T G A G C T G T A C

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGGCCTTGGT-
---CCTTTGTT
 C G T A A T C G A C T G A G T C G T A C A C G T A C G T A C T G A C T G A G C T A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Nr5a2/MA0505.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGGCCTTGGT---
GCTGACCTTGAACTN
 A C G T A C G T C G T A A T C G A C T G A G T C G T A C A C G T A C G T A C T G A C T G A G C T A C G T A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGGCCTTGGT
ACAGGATGTGGT
 A C G T A C G T C G T A A T C G A C T G A G T C G T A C A C G T A C G T A C T G A C T G A G C T
T C G A T A G C G T C A A C T G C T A G C G T A C G A T A C T G A C G T A C T G A C T G A C G T