Information for 15-GAGATAATTCACG (Motif 37)

A T C G G T C A T A C G G T C A C G A T C T G A G T C A G C A T A C G T G A T C G T C A A G T C T C A G
Reverse Opposite:
A G T C A C T G C A G T C A T G G T C A C G T A A C G T A G C T C G T A A C G T A G T C A C G T A T G C
p-value:1e-8
log p-value:-1.923e+01
Information Content per bp:1.662
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif147.3
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets54.4 +/- 29.5bp
Average Position of motif in Background47.9 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0031.1_Hoxa3_1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GAGATAATTCACG
TGGAGGTAATTAAC-
 A C G T A C G T A T C G G T C A T A C G G T C A C G A T C T G A G T C A G C A T A C G T G A T C G T C A A G T C T C A G
C A G T A C T G A T C G G C T A C T A G A T C G G A C T G T C A C G T A A C G T A C G T C T G A T C G A A G T C A C G T

PH0020.1_Dlx1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGATAATTCACG
CTGAGGTAATTAAT-
 A C G T A C G T A T C G G T C A T A C G G T C A C G A T C T G A G T C A G C A T A C G T G A T C G T C A A G T C T C A G
A G T C A G C T C T A G T G C A C T A G C T A G G A C T T C G A C G T A C G A T A C G T C T G A C G T A A G C T A C G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAGATAATTCACG
GAAATGACTCA--
 A T C G G T C A T A C G G T C A C G A T C T G A G T C A G C A T A C G T G A T C G T C A A G T C T C A G
C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A A C G T A C G T

PH0045.1_Hoxa1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGATAATTCACG-
CTGAGCTAATTACCGT
 A C G T A C G T A T C G G T C A T A C G G T C A C G A T C T G A G T C A G C A T A C G T G A T C G T C A A G T C T C A G A C G T
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

JUN(var.2)/MA0489.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAGATAATTCACG
AGGAGATGACTCAT-
 A C G T A C G T A T C G G T C A T A C G G T C A C G A T C T G A G T C A G C A T A C G T G A T C G T C A A G T C T C A G
C T G A C T A G C T A G C T G A C T A G T C G A A C G T A C T G C G T A A T G C C G A T G T A C C G T A A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGATAATTCACG
GGCCATAAATCAC-
 A C G T A T C G G T C A T A C G G T C A C G A T C T G A G T C A G C A T A C G T G A T C G T C A A G T C T C A G
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T

Gata4/MA0482.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAGATAATTCACG
NNGAGATAAGA----
 A C G T A C G T A T C G G T C A T A C G G T C A C G A T C T G A G T C A G C A T A C G T G A T C G T C A A G T C T C A G
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGATAATTCACG
GGCCATAAATCA--
 A C G T A T C G G T C A T A C G G T C A C G A T C T G A G T C A G C A T A C G T G A T C G T C A A G T C T C A G
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGATAATTCACG
-AGATAASR----
 A T C G G T C A T A C G G T C A C G A T C T G A G T C A G C A T A C G T G A T C G T C A A G T C T C A G
A C G T G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A A C G T A C G T A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGATAATTCACG
-AGATAAGA----
 A T C G G T C A T A C G G T C A C G A T C T G A G T C A G C A T A C G T G A T C G T C A A G T C T C A G
A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T A C G T A C G T