Information for 23-YKTGTRKSTRCCWCAK (Motif 35)

A G C T A C G T A C G T A C T G A C G T C T A G A C G T A T G C A C G T C T G A A G T C A G T C C G T A A G T C C G T A A C G T
Reverse Opposite:
G T C A A C G T A C T G C G A T A C T G C T A G A G C T C G T A A T C G G T C A A G T C G T C A A G T C G T C A G T C A C T G A
p-value:1e-8
log p-value:-1.972e+01
Information Content per bp:1.805
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.2 +/- 13.0bp
Average Position of motif in Background71.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.56
Offset:6
Orientation:forward strand
Alignment:YKTGTRKSTRCCWCAK--
------NWAACCACADNN
 A G C T A C G T A C G T A C T G A C G T C T A G A C G T A T G C A C G T C T G A A G T C A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-YKTGTRKSTRCCWCAK
NNGCGTGTGTGCNGCN-
 A C G T A G C T A C G T A C G T A C T G A C G T C T A G A C G T A T G C A C G T C T G A A G T C A G T C C G T A A G T C C G T A A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.54
Offset:3
Orientation:forward strand
Alignment:YKTGTRKSTRCCWCAK
---CTGTCTGTCACCT
 A G C T A C G T A C G T A C T G A C G T C T A G A C G T A T G C A C G T C T G A A G T C A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:YKTGTRKSTRCCWCAK
----TGTCTGDCACCT
 A G C T A C G T A C G T A C T G A C G T C T A G A C G T A T G C A C G T C T G A A G T C A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:YKTGTRKSTRCCWCAK--
-------AAACCACAGAN
 A G C T A C G T A C G T A C T G A C G T C T A G A C G T A T G C A C G T C T G A A G T C A G T C C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:YKTGTRKSTRCCWCAK-
-------AAACCACAGC
 A G C T A C G T A C G T A C T G A C G T C T A G A C G T A T G C A C G T C T G A A G T C A G T C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-YKTGTRKSTRCCWCAK
NNNNTTGTGTGCTTNN-
 A C G T A G C T A C G T A C G T A C T G A C G T C T A G A C G T A T G C A C G T C T G A A G T C A G T C C G T A A G T C C G T A A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:8
Score:0.50
Offset:7
Orientation:forward strand
Alignment:YKTGTRKSTRCCWCAK-
-------AAACCACANN
 A G C T A C G T A C G T A C T G A C G T C T A G A C G T A T G C A C G T C T G A A G T C A G T C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.50
Offset:6
Orientation:forward strand
Alignment:YKTGTRKSTRCCWCAK
------NAAACCACAG
 A G C T A C G T A C G T A C T G A C G T C T A G A C G T A T G C A C G T C T G A A G T C A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

FOS::JUN/MA0099.2/Jaspar

Match Rank:10
Score:0.49
Offset:8
Orientation:forward strand
Alignment:YKTGTRKSTRCCWCAK
--------TGACTCA-
 A G C T A C G T A C G T A C T G A C G T C T A G A C G T A T G C A C G T C T G A A G T C A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A A C G T