Information for 13-AGGATTCAACCAG (Motif 33)

C G T A A C T G A T C G C G T A A C G T A C G T A G T C C G T A C G T A A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G C G A T A C G T C T A G C G T A G T C A A C G T A T G C A G T C A C G T
p-value:1e-8
log p-value:-1.972e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.5 +/- 21.4bp
Average Position of motif in Background44.5 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGGATTCAACCAG-----
-GANGTTAACTAGTTTNN
 C G T A A C T G A T C G C G T A A C G T A C G T A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGGATTCAACCAG
CGGTTTCAAA---
 C G T A A C T G A T C G C G T A A C G T A C G T A G T C C G T A C G T A A G T C A G T C C G T A A C T G
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:3
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGGATTCAACCAG
NGGATTAA-----
 C G T A A C T G A T C G C G T A A C G T A C G T A G T C C G T A C G T A A G T C A G T C C G T A A C T G
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGGATTCAACCAG
VRGGATTARN----
 A C G T C G T A A C T G A T C G C G T A A C G T A C G T A G T C C G T A C G T A A G T C A G T C C G T A A C T G
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T A C G T A C G T

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----AGGATTCAACCAG--
NAAACCGGTTNNAACCGGTT
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A T C G C G T A A C G T A C G T A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C G T A C G T
T G A C T C G A C T G A C T G A A T G C G A T C C T A G T A C G G A C T G A C T G A T C T C G A C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGGATTCAACCAG---
GAAGATCAATCACTAA
 C G T A A C T G A T C G C G T A A C G T A C G T A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C G T A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:AGGATTCAACCAG
--NATTCAAAT--
 C G T A A C T G A T C G C G T A A C G T A C G T A G T C C G T A C G T A A G T C A G T C C G T A A C T G
A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

PH0014.1_Cphx/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGGATTCAACCAG-
ATGATCGAATCAAA
 C G T A A C T G A T C G C G T A A C G T A C G T A G T C C G T A C G T A A G T C A G T C C G T A A C T G A C G T
C T G A C G A T T C A G C G T A C A G T A T G C T A C G T G C A G T C A G A C T A G T C C G T A T C G A G C T A

DUXA/MA0884.1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGGATTCAACCAG
CTAATTTAATCAA
 C G T A A C T G A T C G C G T A A C G T A C G T A G T C C G T A C G T A A G T C A G T C C G T A A C T G
G A T C G A C T C T G A T C G A G A C T A G C T A G C T T G C A C T G A A C G T A G T C C G T A C T G A

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AGGATTCAACCAG
GGGATTAA-----
 C G T A A C T G A T C G C G T A A C G T A C G T A G T C C G T A C G T A A G T C A G T C C G T A A C T G
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T A C G T A C G T