Information for 11-CAGTCACGAC (Motif 30)

A G T C C G T A A T C G A C G T A G T C C G T A T G A C A T C G G C T A A G T C
Reverse Opposite:
A C T G C A G T T A G C A C T G A C G T A C T G G T C A A T G C A C G T A C T G
p-value:1e-9
log p-value:-2.131e+01
Information Content per bp:1.854
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif75.8
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets51.6 +/- 23.5bp
Average Position of motif in Background48.4 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CAGTCACGAC
-AGTCACGC-
 A G T C C G T A A T C G A C G T A G T C C G T A T G A C A T C G G C T A A G T C
A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGTCACGAC--
CNGTCACGCCAC
 A G T C C G T A A T C G A C G T A G T C C G T A T G A C A T C G G C T A A G T C A C G T A C G T
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAGTCACGAC
SCTGTCAVTCAV---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A C G T A G T C C G T A T G A C A T C G G C T A A G T C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CAGTCACGAC
AGCAACAGCCGCACC
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A C G T A G T C C G T A T G A C A T C G G C T A A G T C
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAGTCACGAC
CCAATCAA---
 A C G T A G T C C G T A A T C G A C G T A G T C C G T A T G A C A T C G G C T A A G T C
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAGTCACGAC---
ACATTCATGACACG
 A C G T A G T C C G T A A T C G A C G T A G T C C G T A T G A C A T C G G C T A A G T C A C G T A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCACGAC----
NNGGCCACGCCTTTN
 A C G T A G T C C G T A A T C G A C G T A G T C C G T A T G A C A T C G G C T A A G T C A C G T A C G T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CAGTCACGAC
AGCCACTCAAG--
 A C G T A C G T A C G T A G T C C G T A A T C G A C G T A G T C C G T A T G A C A T C G G C T A A G T C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAGTCACGAC
NCTGTCAATCAN---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A C G T A G T C C G T A T G A C A T C G G C T A A G T C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T

Mitf/MA0620.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAGTCACGAC-
-GGTCACGTGG
 A G T C C G T A A T C G A C G T A G T C C G T A T G A C A T C G G C T A A G T C A C G T
A C G T C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G