Information for 4-CACTGATTAAGAG (Motif 11)

A G T C G T C A A T G C A C G T A C T G C T G A A C G T C A G T G C T A C G T A T A C G C T G A A C T G
Reverse Opposite:
A G T C A G C T A T G C A C G T C A G T G T C A G T C A A G C T A G T C C G T A A T C G A C G T A C T G
p-value:1e-12
log p-value:-2.981e+01
Information Content per bp:1.788
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.9 +/- 22.6bp
Average Position of motif in Background41.0 +/- 7.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0175.1_Vax2/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CACTGATTAAGAG
GTGCACTAATTAAGAC
 A C G T A C G T A C G T A G T C G T C A A T G C A C G T A C T G C T G A A C G T C A G T G C T A C G T A T A C G C T G A A C T G
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CACTGATTAAGAG
GCAGTGATTT----
 A C G T A G T C G T C A A T G C A C G T A C T G C T G A A C G T C A G T G C T A C G T A T A C G C T G A A C T G
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CACTGATTAAGAG
CNGTGATTTN---
 A G T C G T C A A T G C A C G T A C T G C T G A A C G T C A G T G C T A C G T A T A C G C T G A A C T G
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CACTGATTAAGAG
---TGAGTCA---
 A G T C G T C A A T G C A C G T A C T G C T G A A C G T C A G T G C T A C G T A T A C G C T G A A C T G
A C G T A C G T A C G T G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CACTGATTAAGAG
--CTAATTAA---
 A G T C G T C A A T G C A C G T A C T G C T G A A C G T C A G T G C T A C G T A T A C G C T G A A C T G
A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CACTGATTAAGAG-
--NTGATTGACAGN
 A G T C G T C A A T G C A C G T A C T G C T G A A C G T C A G T G C T A C G T A T A C G C T G A A C T G A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PH0039.1_Mnx1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CACTGATTAAGAG
NNNCACTAATTANTNN
 A C G T A C G T A C G T A G T C G T C A A T G C A C G T A C T G C T G A A C G T C A G T G C T A C G T A T A C G C T G A A C T G
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CACTGATTAAGAG
---TGATTGATGA
 A G T C G T C A A T G C A C G T A C T G C T G A A C G T C A G T G C T A C G T A T A C G C T G A A C T G
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

PH0159.1_Rhox6/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CACTGATTAAGAG-
NNGCATTAATTAANGCA
 A C G T A C G T A C G T A G T C G T C A A T G C A C G T A C T G C T G A A C G T C A G T G C T A C G T A T A C G C T G A A C T G A C G T
C T A G C G T A A T C G T G A C T C G A G A C T G A C T G C T A T C G A A C G T C G A T C G T A C T G A A C T G C A T G A G T C C G T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CACTGATTAAGAG-
--BTGABTGACAGS
 A G T C G T C A A T G C A C G T A C T G C T G A A C G T C A G T G C T A C G T A T A C G C T G A A C T G A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C