Information for 13-TTAGGGTTAG (Motif 39)

G C A T A C G T T G C A C A T G A C T G C T A G A C G T A C G T G T C A C T A G
Reverse Opposite:
G A T C C A G T G T C A T G C A G A T C T G A C G T A C A C G T T G C A C G T A
p-value:1e-5
log p-value:-1.289e+01
Information Content per bp:1.693
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.09%
Number of Background Sequences with motif449.2
Percentage of Background Sequences with motif0.96%
Average Position of motif in Targets49.3 +/- 27.8bp
Average Position of motif in Background50.8 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TTAGGGTTAG-
---GGATTAGC
 G C A T A C G T T G C A C A T G A C T G C T A G A C G T A C G T G T C A C T A G A C G T
A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

OTX2/MA0712.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TTAGGGTTAG
--NGGATTAA
 G C A T A C G T T G C A C A T G A C T G C T A G A C G T A C G T G T C A C T A G
A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TTAGGGTTAG
--RGGATTAR
 G C A T A C G T T G C A C A T G A C T G C T A G A C G T A C G T G T C A C T A G
A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TTAGGGTTAG-
--GGGATTANN
 G C A T A C G T T G C A C A T G A C T G C T A G A C G T A C G T G T C A C T A G A C G T
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TTAGGGTTAG-
-VRGGATTARN
 G C A T A C G T T G C A C A T G A C T G C T A G A C G T A C G T G T C A C T A G A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTAGGGTTAG
AAGAGGATTAG
 A C G T G C A T A C G T T G C A C A T G A C T G C T A G A C G T A C G T G T C A C T A G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TTAGGGTTAG
--GGGATTAA
 G C A T A C G T T G C A C A T G A C T G C T A G A C G T A C G T G T C A C T A G
A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTAGGGTTAG
-NGGGATTA-
 G C A T A C G T T G C A C A T G A C T G C T A G A C G T A C G T G T C A C T A G
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

GSC2/MA0891.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTAGGGTTAG-
-GNGGATTAGN
 G C A T A C G T T G C A C A T G A C T G C T A G A C G T A C G T G T C A C T A G A C G T
A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

Dmbx1/MA0883.1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TTAGGGTTAG----
TGAACCGGATTAATGAA
 A C G T A C G T A C G T G C A T A C G T T G C A C A T G A C T G C T A G A C G T A C G T G T C A C T A G A C G T A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A