Information for 13-CTTCATTATCACG (Motif 28)

A T G C A C G T A C G T A G T C G T C A A C G T A C G T G T C A A C G T A G T C C G T A G A T C C T A G
Reverse Opposite:
A G T C C A T G A C G T A C T G C G T A A C G T G T C A G T C A A C G T A C T G C G T A C G T A A T C G
p-value:1e-8
log p-value:-2.064e+01
Information Content per bp:1.779
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif12.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.6 +/- 15.6bp
Average Position of motif in Background47.4 +/- 36.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTTCATTATCACG
-CTCATTTGCATW
 A T G C A C G T A C G T A G T C G T C A A C G T A C G T G T C A A C G T A G T C C G T A G A T C C T A G
A C G T A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTTCATTATCACG
--YCATTAMC---
 A T G C A C G T A C G T A G T C G T C A A C G T A C G T G T C A A C G T A G T C C G T A G A T C C T A G
A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T A C G T

PH0143.1_Pou2f1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTTCATTATCACG-
TACTTAATTAATNNAN
 A C G T A C G T A T G C A C G T A C G T A G T C G T C A A C G T A C G T G T C A A C G T A G T C C G T A G A T C C T A G A C G T
G C A T C G T A T G A C G A C T C G A T G T C A C G T A C G A T A C G T C G T A C G T A G A C T C G T A G A C T C T G A G A C T

PB0031.1_Hoxa3_1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTTCATTATCACG-
GTTAATTANCTCNN
 A T G C A C G T A C G T A G T C G T C A A C G T A C G T G T C A A C G T A G T C C G T A G A T C C T A G A C G T
T C A G A G C T A G C T G T C A C G T A A C G T A C G T C T G A T A G C G A T C C G A T T A G C T G A C G C T A

Hoxb5/MA0904.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTTCATTATCACG-
ACGGTAATTAGCTCAT
 A C G T A C G T A T G C A C G T A C G T A G T C G T C A A C G T A C G T G T C A A C G T A G T C C G T A G A T C C T A G A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0060.1_Hoxb5/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTTCATTATCACG-
ACGGTAATTAGCTCAT
 A C G T A C G T A T G C A C G T A C G T A G T C G T C A A C G T A C G T G T C A A C G T A G T C C G T A G A T C C T A G A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTTCATTATCACG
-BTVATTWGCATA
 A T G C A C G T A C G T A G T C G T C A A C G T A C G T G T C A A C G T A G T C C G T A G A T C C T A G
A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

POU6F2/MA0793.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTTCATTATCACG
AGCTCATTAT----
 A C G T A T G C A C G T A C G T A G T C G T C A A C G T A C G T G T C A A C G T A G T C C G T A G A T C C T A G
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T A C G T A C G T

PH0174.1_Vax1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTTCATTATCACG-
ACGTTAATTAACCCAG
 A C G T A C G T A T G C A C G T A C G T A G T C G T C A A C G T A C G T G T C A A C G T A G T C C G T A G A T C C T A G A C G T
T G C A T A G C T C A G C G A T G A C T G T C A G C T A C G A T C A G T C T G A T C G A A G T C G A T C G A T C C G T A C T A G

POU3F2/MA0787.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTTCATTATCACG-
--TAATTTGCATAA
 A T G C A C G T A C G T A G T C G T C A A C G T A C G T G T C A A C G T A G T C C G T A G A T C C T A G A C G T
A C G T A C G T C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A