Information for 3-GCTWAAWCAAKTT (Motif 4)

A C T G A T G C A C G T C G T A C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A T G A C A C G T A C G T A C T G C G A T A C G T A C G T C G A T C G T A A T C G A G T C
p-value:1e-12
log p-value:-2.781e+01
Information Content per bp:1.889
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.0 +/- 20.1bp
Average Position of motif in Background43.8 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GCTWAAWCAAKTT
---TAATCAATTA
 A C T G A T G C A C G T C G T A C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A

SRY/MA0084.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCTWAAWCAAKTT
--GTAAACAAT--
 A C T G A T G C A C G T C G T A C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCTWAAWCAAKTT-
NNCNNAACAATTNT
 A C T G A T G C A C G T C G T A C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A C G T
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

PB0175.1_Sox4_2/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCTWAAWCAAKTT----
TNCNNAACAATTTTTNC
 A C T G A T G C A C G T C G T A C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

PB0066.1_Sox17_1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCTWAAWCAAKTT----
--ATAAACAATTAAACA
 A C T G A T G C A C G T C G T A C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCTWAAWCAAKTT
-HNRAATCAAT--
 A C T G A T G C A C G T C G T A C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T
A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCTWAAWCAAKTT
----NAACAAT--
 A C T G A T G C A C G T C G T A C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCTWAAWCAAKTT--
NNTNANAACAATTNNA
 A C G T A C T G A T G C A C G T C G T A C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PAX3/MA0780.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCTWAAWCAAKTT
---TAATCGATTA
 A C T G A T G C A C G T C G T A C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T G A T C G A G A C T A G T C T C A G T C G A C A G T A G C T G C T A

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GCTWAAWCAAKTT
-----AACAAT--
 A C T G A T G C A C G T C G T A C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T