Information for 11-AGCAGGGYCGAGGCAG (Motif 20)

G T C A A C T G A G T C C T G A C T A G C T A G A C T G A G T C T A G C A T C G C G T A A T C G A C T G T A G C C G T A A C T G
Reverse Opposite:
A G T C A C G T A T C G T A G C A T G C A C G T A T G C A T C G T C A G A G T C A G T C A G T C G A C T C T A G G T A C A C G T
p-value:1e-9
log p-value:-2.113e+01
Information Content per bp:1.731
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif19.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets44.1 +/- 25.9bp
Average Position of motif in Background38.2 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AGCAGGGYCGAGGCAG
CACAGCAGGGGG-------
 A C G T A C G T A C G T G T C A A C T G A G T C C T G A C T A G C T A G A C T G A G T C T A G C A T C G C G T A A T C G A C T G T A G C C G T A A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

KLF16/MA0741.1/Jaspar

Match Rank:2
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:AGCAGGGYCGAGGCAG
---GGGGGCGTGGC--
 G T C A A C T G A G T C C T G A C T A G C T A G A C T G A G T C T A G C A T C G C G T A A T C G A C T G T A G C C G T A A C T G
A C G T A C G T A C G T C T A G C A T G C T A G A T C G A C T G G A T C C A T G A C G T C A T G C A T G A G T C A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:3
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:AGCAGGGYCGAGGCAG
---GGGGGCGGGGCC-
 G T C A A C T G A G T C C T G A C T A G C T A G A C T G A G T C T A G C A T C G C G T A A T C G A C T G T A G C C G T A A C T G
A C G T A C G T A C G T T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--AGCAGGGYCGAGGCAG
AGAGCGGGGTCAAGTA--
 A C G T A C G T G T C A A C T G A G T C C T G A C T A G C T A G A C T G A G T C T A G C A T C G C G T A A T C G A C T G T A G C C G T A A C T G
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A A C G T A C G T

SP1/MA0079.3/Jaspar

Match Rank:5
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:AGCAGGGYCGAGGCAG
---GGGGGCGGGGC--
 G T C A A C T G A G T C C T G A C T A G C T A G A C T G A G T C T A G C A T C G C G T A A T C G A C T G T A G C C G T A A C T G
A C G T A C G T A C G T T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C A C G T A C G T

PB0107.1_Ascl2_2/Jaspar

Match Rank:6
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:AGCAGGGYCGAGGCAG
NATNGGGNGGGGANAN
 G T C A A C T G A G T C C T G A C T A G C T A G A C T G A G T C T A G C A T C G C G T A A T C G A C T G T A G C C G T A A C T G
C T G A T G C A G A C T T C G A C T A G C T A G T C A G G A T C A C T G C A T G A T C G C A T G G C T A A C G T C T G A T A C G

PB0039.1_Klf7_1/Jaspar

Match Rank:7
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AGCAGGGYCGAGGCAG-
-NNAGGGGCGGGGTNNA
 G T C A A C T G A G T C C T G A C T A G C T A G A C T G A G T C T A G C A T C G C G T A A T C G A C T G T A G C C G T A A C T G A C G T
A C G T G C T A C G A T C T G A C T A G C T A G A C T G A C T G G A T C C A T G A C T G C A T G C A T G A G C T G A T C T C A G C G T A

KLF13/MA0657.1/Jaspar

Match Rank:8
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--AGCAGGGYCGAGGCAG
CAAAAAGGGGCGTGGCAT
 A C G T A C G T G T C A A C T G A G T C C T G A C T A G C T A G A C T G A G T C T A G C A T C G C G T A A T C G A C T G T A G C C G T A A C T G
G T A C G T C A G T C A G T C A C T G A C T G A C A T G C T A G A C T G C T A G G A T C T A C G A G C T C A T G C A T G G A T C G T C A G A C T

SP2/MA0516.1/Jaspar

Match Rank:9
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGGGYCGAGGCAG
GGGNGGGGGCGGGGC--
 A C G T G T C A A C T G A G T C C T G A C T A G C T A G A C T G A G T C T A G C A T C G C G T A A T C G A C T G T A G C C G T A A C T G
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C A C G T A C G T

SP3/MA0746.1/Jaspar

Match Rank:10
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:AGCAGGGYCGAGGCAG
---GGGGGCGTGGN--
 G T C A A C T G A G T C C T G A C T A G C T A G A C T G A G T C T A G C A T C G C G T A A T C G A C T G T A G C C G T A A C T G
A C G T A C G T A C G T C T A G C A T G T C A G C A T G C A T G G A T C C T A G A C G T C A T G C A T G A T G C A C G T A C G T