Information for 14-CKCTGMTRTAWAG (Motif 28)

A G T C A C G T A G T C A C G T A C T G G T C A A C G T C T A G A C G T C G T A G C A T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C G T C G T A A G T C C G T A A C G T A G T C C G T A A C T G G T C A A C T G
p-value:1e-8
log p-value:-1.979e+01
Information Content per bp:1.877
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.8 +/- 35.8bp
Average Position of motif in Background21.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CKCTGMTRTAWAG---
AGGACGCTGTAAAGGGA
 A C G T A G T C A C G T A G T C A C G T A C T G G T C A A C G T C T A G A C G T C G T A G C A T C G T A A C T G A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CKCTGMTRTAWAG---
AAGACGCTGTAAAGCGA
 A C G T A G T C A C G T A G T C A C G T A C T G G T C A A C G T C T A G A C G T C G T A G C A T C G T A A C T G A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CKCTGMTRTAWAG---
AAGACGCTGTAAAGCGA
 A C G T A G T C A C G T A G T C A C G T A C T G G T C A A C G T C T A G A C G T C G T A G C A T C G T A A C T G A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CKCTGMTRTAWAG--
---TGATTTATGGCC
 A G T C A C G T A G T C A C G T A C T G G T C A A C G T C T A G A C G T C G T A G C A T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PB0082.1_Tcf3_1/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CKCTGMTRTAWAG
NNTTCCTTTGATCTANA-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C T G G T C A A C G T C T A G A C G T C G T A G C A T C G T A A C T G
C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CKCTGMTRTAWAG
ATTTCCTTTGATCTATA-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C T G G T C A A C G T C T A G A C G T C G T A G C A T C G T A A C T G
C G T A C G A T C A G T A G C T A G T C A G T C G A C T G A C T C G A T A C T G C G T A C G A T T A G C G C A T C G T A C A G T T G C A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CKCTGMTRTAWAG--
--NTGATTTATGGCC
 A G T C A C G T A G T C A C G T A C T G G T C A A C G T C T A G A C G T C G T A G C A T C G T A A C T G A C G T A C G T
A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CKCTGMTRTAWAG-
---TGATTTATGGC
 A G T C A C G T A G T C A C G T A C T G G T C A A C G T C T A G A C G T C G T A G C A T C G T A A C T G A C G T
A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CKCTGMTRTAWAG
--ATGATGCAAT-
 A G T C A C G T A G T C A C G T A C T G G T C A A C G T C T A G A C G T C G T A G C A T C G T A A C T G
A C G T A C G T T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CKCTGMTRTAWAG
NNTTCCTTTGATCTNNA-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C T G G T C A A C G T C T A G A C G T C G T A G C A T C G T A A C T G
C G A T C G A T C A G T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G C A A C G T