Information for 1-GGCCACYAGRGGGCGC (Motif 1)

A T C G C A T G A T G C A G T C C T G A A T G C G A T C C G T A A C T G C T A G A C T G A C T G C T A G G T A C T C A G A T G C
Reverse Opposite:
A T C G A G T C C A T G A G T C A G T C G T A C A G T C A G T C A C G T C T A G A T C G A G C T A C T G A T C G G T A C T A G C
p-value:1e-108
log p-value:-2.491e+02
Information Content per bp:1.718
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif9.80%
Number of Background Sequences with motif70.2
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets51.6 +/- 23.6bp
Average Position of motif in Background49.8 +/- 23.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-GGCCACYAGRGGGCGC--
TGGCCACCAGGGGGCGCTA
 A C G T A T C G C A T G A T G C A G T C C T G A A T G C G A T C C G T A A C T G C T A G A C T G A C T G C T A G G T A C T C A G A T G C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:GGCCACYAGRGGGCGC-----
-GCCASCAGGGGGCGCYVNNG
 A T C G C A T G A T G C A G T C C T G A A T G C G A T C C G T A A C T G C T A G A C T G A C T G C T A G G T A C T C A G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-GGCCACYAGRGGGCGC---
TGGCCACCAGGTGGCACTNT
 A C G T A T C G C A T G A T G C A G T C C T G A A T G C G A T C C G T A A C T G C T A G A C T G A C T G C T A G G T A C T C A G A T G C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGCCACYAGRGGGCGC----
---NNNAAGGGGGCGGGNNN
 A T C G C A T G A T G C A G T C C T G A A T G C G A T C C G T A A C T G C T A G A C T G A C T G C T A G G T A C T C A G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGCCACYAGRGGGCGC
----AACAGATGGC--
 A T C G C A T G A T G C A G T C C T G A A T G C G A T C C G T A A C T G C T A G A C T G A C T G C T A G G T A C T C A G A T G C
A C G T A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGCCACYAGRGGGCGC
CACCCCCGGGGGGG--
 A T C G C A T G A T G C A G T C C T G A A T G C G A T C C G T A A C T G C T A G A C T G A C T G C T A G G T A C T C A G A T G C
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCCACYAGRGGGCGC
DCHCAGCAGGRGGCC-
 A T C G C A T G A T G C A G T C C T G A A T G C G A T C C G T A A C T G C T A G A C T G A C T G C T A G G T A C T C A G A T G C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGCCACYAGRGGGCGC
-CACAGCAGGGGG---
 A T C G C A T G A T G C A G T C C T G A A T G C G A T C C G T A A C T G C T A G A C T G A C T G C T A G G T A C T C A G A T G C
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGCCACYAGRGGGCGC
NCCCCCCCGGGGGGN-
 A T C G C A T G A T G C A G T C C T G A A T G C G A T C C G T A A C T G C T A G A C T G A C T G C T A G G T A C T C A G A T G C
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G A C G T

YY1(Zf)/Promoter/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GGCCACYAGRGGGCGC-
-----CAAGATGGCGGC
 A T C G C A T G A T G C A G T C C T G A A T G C G A T C C G T A A C T G C T A G A C T G A C T G C T A G G T A C T C A G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C