Information for 4-SMAMAKAAAGYCAASG (Motif 4)

A T C G T G C A G T C A G T C A C G T A A C T G C G T A C G T A C G T A A C T G A G T C A G T C C G T A C G T A A T C G C A T G
Reverse Opposite:
G A T C A T G C A C G T A C G T C T A G C T A G G T A C A C G T A C G T A C G T G T A C A C G T A C G T A C G T A C G T A T G C
p-value:1e-10
log p-value:-2.506e+01
Information Content per bp:1.843
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 20.7bp
Average Position of motif in Background58.7 +/- 10.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.68
Offset:5
Orientation:forward strand
Alignment:SMAMAKAAAGYCAASG
-----AAAAGTCAA--
 A T C G T G C A G T C A G T C A C G T A A C T G C G T A C G T A C G T A A C T G A G T C A G T C C G T A C G T A A T C G C A T G
A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T

IRF1/MA0050.2/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:SMAMAKAAAGYCAASG-----
AAANNGAAAGTGAAAGTAAAN
 A T C G T G C A G T C A G T C A C G T A A C T G C G T A C G T A C G T A A C T G A G T C A G T C C G T A C G T A A T C G C A T G A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-SMAMAKAAAGYCAASG
AGAAACGAAAGT-----
 A C G T A T C G T G C A G T C A G T C A C G T A A C T G C G T A C G T A C G T A A C T G A G T C A G T C C G T A C G T A A T C G C A T G
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:forward strand
Alignment:SMAMAKAAAGYCAASG---
----AGAAAGTGAAAGTGA
 A T C G T G C A G T C A G T C A C G T A A C T G C G T A C G T A C G T A A C T G A G T C A G T C C G T A C G T A A T C G C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:SMAMAKAAAGYCAASG
-AAAACAAAGG-----
 A T C G T G C A G T C A G T C A C G T A A C T G C G T A C G T A C G T A A C T G A G T C A G T C C G T A C G T A A T C G C A T G
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:SMAMAKAAAGYCAASG-
-----GAAAGTGAAAGT
 A T C G T G C A G T C A G T C A C G T A A C T G C G T A C G T A C G T A A C T G A G T C A G T C C G T A C G T A A T C G C A T G A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:7
Score:0.54
Offset:5
Orientation:forward strand
Alignment:SMAMAKAAAGYCAASG-
-----GAAASYGAAASY
 A T C G T G C A G T C A G T C A C G T A A C T G C G T A C G T A C G T A A C T G A G T C A G T C C G T A C G T A A T C G C A T G A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A C T G A C G T A T A C G G A C T T C A G T C G A G T C A T G C A T A C G A G C T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:SMAMAKAAAGYCAASG
-AACAGGAAGT-----
 A T C G T G C A G T C A G T C A C G T A A C T G C G T A C G T A C G T A A C T G A G T C A G T C C G T A C G T A A T C G C A T G
A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-SMAMAKAAAGYCAASG
GAAAGTGAAAGT-----
 A C G T A T C G T G C A G T C A G T C A C G T A A C T G C G T A C G T A C G T A A C T G A G T C A G T C C G T A C G T A A T C G C A T G
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.53
Offset:7
Orientation:forward strand
Alignment:SMAMAKAAAGYCAASG---
-------AGGTCAAGGTCA
 A T C G T G C A G T C A G T C A C G T A A C T G C G T A C G T A C G T A A C T G A G T C A G T C C G T A C G T A A T C G C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A