Information for 8-GCAGTAGCCAAGG (Motif 7)

A C T G G T A C C G T A A C T G C G A T C G T A A T C G A G T C A T G C C G T A G T C A A C T G C A T G
Reverse Opposite:
G T A C A G T C A C G T A C G T A T C G T C A G A T G C A C G T C G T A A G T C A C G T A C T G A G T C
p-value:1e-11
log p-value:-2.695e+01
Information Content per bp:1.839
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.3 +/- 23.8bp
Average Position of motif in Background42.8 +/- 10.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0158.1_Rfx3_2/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GCAGTAGCCAAGG------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C T G C G A T C G T A A T C G A G T C A T G C C G T A G T C A A C T G C A T G A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCAGTAGCCAAGG
ATGTACAGTAGCAAAG-
 A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C T G C G A T C G T A A T C G A G T C A T G C C G T A G T C A A C T G C A T G
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCAGTAGCCAAGG
ATTTACAGTAGCAAAA-
 A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C T G C G A T C G T A A T C G A G T C A T G C C G T A G T C A A C T G C A T G
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCAGTAGCCAAGG--
NNNGTAACTANGNNA
 A C T G G T A C C G T A A C T G C G A T C G T A A T C G A G T C A T G C C G T A G T C A A C T G C A T G A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCAGTAGCCAAGG----
---GTTGCCATGGNAAC
 A C T G G T A C C G T A A C T G C G A T C G T A A T C G A G T C A T G C C G T A G T C A A C T G C A T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCAGTAGCCAAGG-
NNAATTAGTCACGGT
 A C G T A C T G G T A C C G T A A C T G C G A T C G T A A T C G A G T C A T G C C G T A G T C A A C T G C A T G A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCAGTAGCCAAGG--
NTNNCGTATCCAAGTNN
 A C G T A C G T A C T G G T A C C G T A A C T G C G A T C G T A A T C G A G T C A T G C C G T A G T C A A C T G C A T G A C G T A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCAGTAGCCAAGG
-CTGTTGCTAGGS
 A C T G G T A C C G T A A C T G C G A T C G T A A T C G A G T C A T G C C G T A G T C A A C T G C A T G
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCAGTAGCCAAGG---
--NGTTGCCATGGCAA
 A C T G G T A C C G T A A C T G C G A T C G T A A T C G A G T C A T G C C G T A G T C A A C T G C A T G A C G T A C G T A C G T
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX4/MA0799.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GCAGTAGCCAAGG-----
--CGTTGCCATGGCAACN
 A C T G G T A C C G T A A C T G C G A T C G T A A T C G A G T C A T G C C G T A G T C A A C T G C A T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G