Information for 12-TGGCASCARA (Motif 9)

A C G T C A T G A C T G A G T C C G T A A T G C T A G C C G T A T C A G C T G A
Reverse Opposite:
A G C T A G T C A C G T A C T G A T C G C G A T A C T G T G A C G A T C C G T A
p-value:1e-15
log p-value:-3.515e+01
Information Content per bp:1.784
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.02%
Number of Background Sequences with motif23.3
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets50.9 +/- 23.8bp
Average Position of motif in Background55.8 +/- 39.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TGGCASCARA
SCTGTCARCACC
 A C G T A C G T A C G T C A T G A C T G A G T C C G T A A T G C T A G C C G T A T C A G C T G A
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

PB0041.1_Mafb_1/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TGGCASCARA---
NCTANGTCAGCAAATTT
 A C G T A C G T A C G T A C G T A C G T C A T G A C T G A G T C C G T A A T G C T A G C C G T A T C A G C T G A A C G T A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

NRL/MA0842.1/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGGCASCARA--
-GTCAGCANNTN
 A C G T C A T G A C T G A G T C C G T A A T G C T A G C C G T A T C A G C T G A A C G T A C G T
A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGGCASCARA
CTTGGCAA----
 A C G T A C G T A C G T C A T G A C T G A G T C C G T A A T G C T A G C C G T A T C A G C T G A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TGGCASCARA
VGCTGWCAVB---
 A C G T A C G T A C G T A C G T C A T G A C T G A G T C C G T A A T G C T A G C C G T A T C A G C T G A
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGGCASCARA
NTTGGCANN---
 A C G T A C G T A C G T C A T G A C T G A G T C C G T A A T G C T A G C C G T A T C A G C T G A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGGCASCARA
YTGWCADY---
 A C G T A C G T C A T G A C T G A G T C C G T A A T G C T A G C C G T A T C A G C T G A
G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGGCASCARA
NNTTGGCANN---
 A C G T A C G T A C G T A C G T C A T G A C T G A G T C C G T A A T G C T A G C C G T A T C A G C T G A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGGCASCARA
ARNTGACA-----
 A C G T A C G T A C G T A C G T C A T G A C T G A G T C C G T A A T G C T A G C C G T A T C A G C T G A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGGCASCARA--
CTGAGTCAGCAATTT
 A C G T A C G T A C G T A C G T C A T G A C T G A G T C C G T A A T G C T A G C C G T A T C A G C T G A A C G T A C G T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T