Information for 9-CAAGGGTTAAAAC (Motif 10)

G T A C C G T A G C T A C T A G C A T G T A C G C G A T C G A T C T G A G T C A G C T A C T G A A G T C
Reverse Opposite:
T A C G A G C T C A G T A C G T A G C T G C T A G C T A A T G C G T A C A G T C C A G T A C G T C A T G
p-value:1e-13
log p-value:-3.187e+01
Information Content per bp:1.663
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets63.1 +/- 26.1bp
Average Position of motif in Background31.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBR1/MA0802.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAAGGGTTAAAAC
-AGGTGTGAAA--
 G T A C C G T A G C T A C T A G C A T G T A C G C G A T C G A T C T G A G T C A G C T A C T G A A G T C
A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAAGGGTTAAAAC--
TAAAGTCGTAAAACAT
 A C G T G T A C C G T A G C T A C T A G C A T G T A C G C G A T C G A T C T G A G T C A G C T A C T G A A G T C A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAAGGGTTAAAAC
-AGGTGTTAAT--
 G T A C C G T A G C T A C T A G C A T G T A C G C G A T C G A T C T G A G T C A G C T A C T G A A G T C
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAAGGGTTAAAAC
AAGGTGTGAAA--
 G T A C C G T A G C T A C T A G C A T G T A C G C G A T C G A T C T G A G T C A G C T A C T G A A G T C
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAAGGGTTAAAAC--
TAAAGTCGTAAAATAG
 A C G T G T A C C G T A G C T A C T A G C A T G T A C G C G A T C G A T C T G A G T C A G C T A C T G A A G T C A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CAAGGGTTAAAAC-
GAAAAGGTGTGAAAATT
 A C G T A C G T A C G T G T A C C G T A G C T A C T A G C A T G T A C G C G A T C G A T C T G A G T C A G C T A C T G A A G T C A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAAGGGTTAAAAC
-AGGTGTGAAM--
 G T A C C G T A G C T A C T A G C A T G T A C G C G A T C G A T C T G A G T C A G C T A C T G A A G T C
A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAAGGGTTAAAAC
-AAGCCATAAAA-
 G T A C C G T A G C T A C T A G C A T G T A C G C G A T C G A T C T G A G T C A G C T A C T G A A G T C
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

PB0109.1_Bbx_2/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAAGGGTTAAAAC----
TGATTGTTAACAGTTGG
 G T A C C G T A G C T A C T A G C A T G T A C G C G A T C G A T C T G A G T C A G C T A C T G A A G T C A C G T A C G T A C G T A C G T
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

EOMES/MA0800.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAAGGGTTAAAAC
AAGGTGTGAAAAT
 G T A C C G T A G C T A C T A G C A T G T A C G C G A T C G A T C T G A G T C A G C T A C T G A A G T C
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T