Information for 11-GCACTTTAAT (Motif 20)

A T C G A G T C C G T A G A T C G A C T A G C T G A C T C G T A C G T A A G C T
Reverse Opposite:
C T G A A C G T C G A T C T G A T C G A C T G A C T A G A C G T A C T G A T G C
p-value:1e-9
log p-value:-2.167e+01
Information Content per bp:1.832
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.83%
Number of Background Sequences with motif195.2
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets37.4 +/- 26.6bp
Average Position of motif in Background51.8 +/- 34.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-8/MA0673.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GCACTTTAAT
CCACTTGAA-
 A T C G A G T C C G T A G A T C G A C T A G C T G A C T C G T A C G T A A G C T
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCACTTTAAT
ACCACTTGAA-
 A C G T A T C G A G T C C G T A G A T C G A C T A G C T G A C T C G T A C G T A A G C T
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCACTTTAAT
GCACTTAA--
 A T C G A G T C C G T A G A T C G A C T A G C T G A C T C G T A C G T A A G C T
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:GCACTTTAAT
----TTTAAT
 A T C G A G T C C G T A G A T C G A C T A G C T G A C T C G T A C G T A A G C T
A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCACTTTAAT--
TAAGCCACTTGAATTT
 A C G T A C G T A C G T A C G T A T C G A G T C C G T A G A T C G A C T A G C T G A C T C G T A C G T A A G C T A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCACTTTAAT
MRSCACTYAA--
 A C G T A C G T A T C G A G T C C G T A G A T C G A C T A G C T G A C T C G T A C G T A A G C T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCACTTTAAT
NSCACTYVAV-
 A C G T A T C G A G T C C G T A G A T C G A C T A G C T G A C T C G T A C G T A A G C T
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCACTTTAAT
RSCACTYRAG-
 A C G T A T C G A G T C C G T A G A T C G A C T A G C T G A C T C G T A C G T A A G C T
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCACTTTAAT
ACCACTTAA--
 A C G T A T C G A G T C C G T A G A T C G A C T A G C T G A C T C G T A C G T A A G C T
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCACTTTAAT
AASCACTCAA--
 A C G T A C G T A T C G A G T C C G T A G A T C G A C T A G C T G A C T C G T A C G T A A G C T
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T