Information for 1-GGAACAAAGG (Motif 1)

C T A G C T A G T G C A G C T A A T G C G T C A T G C A C G T A C T A G T C A G
Reverse Opposite:
A G T C G A T C G C A T A C G T C A G T T A C G C G A T A C G T G A T C G A T C
p-value:1e-35
log p-value:-8.252e+01
Information Content per bp:1.604
Number of Target Sequences with motif191.0
Percentage of Target Sequences with motif30.08%
Number of Background Sequences with motif5402.7
Percentage of Background Sequences with motif11.46%
Average Position of motif in Targets52.0 +/- 24.5bp
Average Position of motif in Background50.6 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:GGAACAAAGG
GGAACAAAGR
 C T A G C T A G T G C A G C T A A T G C G T C A T G C A C G T A C T A G T C A G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GGAACAAAGG
VRRACAAWGG
 C T A G C T A G T G C A G C T A A T G C G T C A T G C A C G T A C T A G T C A G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:GGAACAAAGG
AAAACAAAGG
 C T A G C T A G T G C A G C T A A T G C G T C A T G C A C G T A C T A G T C A G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---GGAACAAAGG----
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T C T A G C T A G T G C A G C T A A T G C G T C A T G C A C G T A C T A G T C A G A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---GGAACAAAGG----
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T C T A G C T A G T G C A G C T A A T G C G T C A T G C A C G T A C T A G T C A G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:GGAACAAAGG
--RACAAWGG
 C T A G C T A G T G C A G C T A A T G C G T C A T G C A C G T A C T A G T C A G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:GGAACAAAGG
--AACAAAGG
 C T A G C T A G T G C A G C T A A T G C G T C A T G C A C G T A C T A G T C A G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:GGAACAAAGG-
-GAACAATGGN
 C T A G C T A G T G C A G C T A A T G C G T C A T G C A C G T A C T A G T C A G A C G T
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:GGAACAAAGG
AAAACAATGG
 C T A G C T A G T G C A G C T A A T G C G T C A T G C A C G T A C T A G T C A G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.90
Offset:1
Orientation:forward strand
Alignment:GGAACAAAGG-
-RAACAATGGN
 C T A G C T A G T G C A G C T A A T G C G T C A T G C A C G T A C T A G T C A G A C G T
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C