Information for 5-WYCAWATKCATCACCA (Motif 9)

C G A T A G C T A T G C C G T A C G T A C G T A C A G T A C T G A T G C C G T A C G A T G T A C C G T A A G T C G T A C G T C A
Reverse Opposite:
A C G T A C T G A C T G A C G T A C T G C G T A A C G T A T C G G T A C G C T A A C G T C G A T A C G T A T C G C T G A C G T A
p-value:1e-13
log p-value:-3.155e+01
Information Content per bp:1.768
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 25.2bp
Average Position of motif in Background82.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:WYCAWATKCATCACCA
-GHATATKCAT-----
 C G A T A G C T A T G C C G T A C G T A C G T A C A G T A C T G A T G C C G T A C G A T G T A C C G T A A G T C G T A C G T C A
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:WYCAWATKCATCACCA--
---ATTTGCATAACAAAG
 C G A T A G C T A T G C C G T A C G T A C G T A C A G T A C T G A T G C C G T A C G A T G T A C C G T A A G T C G T A C G T C A A C G T A C G T
A C G T A C G T A C G T G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-WYCAWATKCATCACCA
ATGAATATTCATGAG--
 A C G T C G A T A G C T A T G C C G T A C G T A C G T A C A G T A C T G A T G C C G T A C G A T G T A C C G T A A G T C G T A C G T C A
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:WYCAWATKCATCACCA
-GAATATTCAT-----
 C G A T A G C T A T G C C G T A C G T A C G T A C A G T A C T G A T G C C G T A C G A T G T A C C G T A A G T C G T A C G T C A
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:WYCAWATKCATCACCA--
---ATTTGCATAACAATG
 C G A T A G C T A T G C C G T A C G T A C G T A C A G T A C T G A T G C C G T A C G A T G T A C C G T A A G T C G T A C G T C A A C G T A C G T
A C G T A C G T A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

PH0017.1_Cux1_2/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:WYCAWATKCATCACCA---
----TAGTGATCATCATTA
 C G A T A G C T A T G C C G T A C G T A C G T A C A G T A C T G A T G C C G T A C G A T G T A C C G T A A G T C G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:WYCAWATKCATCACCA-
---ACATTCATGACACG
 C G A T A G C T A T G C C G T A C G T A C G T A C A G T A C T G A T G C C G T A C G A T G T A C C G T A A G T C G T A C G T C A A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:WYCAWATKCATCACCA
--GYCATCMATCAT--
 C G A T A G C T A T G C C G T A C G T A C G T A C A G T A C T G A T G C C G T A C G A T G T A C C G T A A G T C G T A C G T C A
A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:WYCAWATKCATCACCA-
AAAATATGCATAATAAA
 C G A T A G C T A T G C C G T A C G T A C G T A C A G T A C T G A T G C C G T A C G A T G T A C C G T A A G T C G T A C G T C A A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:WYCAWATKCATCACCA
----ATTGCATCAK--
 C G A T A G C T A T G C C G T A C G T A C G T A C A G T A C T G A T G C C G T A C G A T G T A C C G T A A G T C G T A C G T C A
A C G T A C G T A C G T A C G T T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T A C G T A C G T