Information for 12-AGGAATAGCC (Motif 41)

C G T A A C T G A C T G C G T A C G T A A C G T G T C A A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A C G T C G T A A C G T A C G T A G T C A G T C C G A T
p-value:1e-7
log p-value:-1.786e+01
Information Content per bp:1.941
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif10.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.3 +/- 28.4bp
Average Position of motif in Background37.4 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REL/MA0101.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AGGAATAGCC-
-GGAAANCCCC
 C G T A A C T G A C T G C G T A C G T A A C G T G T C A A C T G A G T C A G T C A C G T
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGGAATAGCC
TGGAACAGMA
 C G T A A C T G A C T G C G T A C G T A A C G T G T C A A C T G A G T C A G T C
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGGAATAGCC-
-GGAAATCCCC
 C G T A A C T G A C T G C G T A C G T A A C G T G T C A A C T G A G T C A G T C A C G T
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGGAATAGCC
-GGATTAGC-
 C G T A A C T G A C T G C G T A C G T A A C G T G T C A A C T G A G T C A G T C
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T

PH0015.1_Crx/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AGGAATAGCC-
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C G T G T C A A C T G A G T C A G T C A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

SPIB/MA0081.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGGAATAGCC
AGAGGAA-----
 A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C G T G T C A A C T G A G T C A G T C
C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGAATAGCC
NCTGGAATGC--
 A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C G T G T C A A C T G A G T C A G T C
G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGGAATAGCC--
GGGAAATCCCCN
 C G T A A C T G A C T G C G T A C G T A A C G T G T C A A C T G A G T C A G T C A C G T A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

RELA/MA0107.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGGAATAGCC-
-GGAAATTCCC
 C G T A A C T G A C T G C G T A C G T A A C G T G T C A A C T G A G T C A G T C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGGAATAGCC---
AGGGGGATTAGCTGCC
 A C G T A C G T A C G T C G T A A C T G A C T G C G T A C G T A A C G T G T C A A C T G A G T C A G T C A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C