Information for 15-AGCACABTHAVGT (Motif 33)

C G T A A C T G A T G C C G T A A G T C C G T A A C G T C G A T G A T C C G T A T C G A C T A G A G C T
Reverse Opposite:
C T G A A G T C A G C T A C G T C A T G C G T A T G C A A C G T C T A G A C G T A T C G A G T C C G A T
p-value:1e-7
log p-value:-1.703e+01
Information Content per bp:1.759
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets18.8 +/- 10.8bp
Average Position of motif in Background63.3 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGCACABTHAVGT
CGAAGCACACAAAATA
 A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C G T C G A T G A T C C G T A T C G A C T A G A G C T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGCACABTHAVGT
CCAGGAACAG------
 A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C G T C G A T G A T C C G T A T C G A C T A G A G C T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:3
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------AGCACABTHAVGT
TACATGTGCACATAAAA--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C G T C G A T G A T C C G T A T C G A C T A G A G C T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AGCACABTHAVGT
AGCGGCACACACGCAA
 A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C G T C G A T G A T C C G T A T C G A C T A G A G C T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGCACABTHAVGT---
GACCACATTCATACAAT
 A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C G T C G A T G A T C C G T A T C G A C T A G A G C T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0072.1_Sox5_1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGCACABTHAVGT
TTTAGAACAATAAAAT
 A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C G T C G A T G A T C C G T A T C G A C T A G A G C T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PB0026.1_Gm397_1/Jaspar

Match Rank:7
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------AGCACABTHAVGT
CAGATGTGCACATACGT--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C G T C G A T G A T C C G T A T C G A C T A G A G C T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGCACABTHAVGT
TTAAGAACAATAAATT
 A C G T A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C G T C G A T G A T C C G T A T C G A C T A G A G C T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGCACABTHAVGT
TRAGGTCA-------
 A C G T A C G T C G T A A C T G A T G C C G T A A G T C C G T A A C G T C G A T G A T C C G T A T C G A C T A G A G C T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

T/MA0009.2/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGCACABTHAVGT----
-TCACACCTAGGTGTGA
 C G T A A C T G A T G C C G T A A G T C C G T A A C G T C G A T G A T C C G T A T C G A C T A G A G C T A C G T A C G T A C G T A C G T
A C G T G A C T T G A C C T G A A G T C T C G A G A T C T G A C G A C T C G T A A C T G C T A G A G C T C T A G G A C T A C T G C T G A