Information for 3-TCACTATGCATTC (Motif 3)

A G C T A G T C G T C A T A G C A C G T G T C A A C G T C T A G A G T C C G T A C G A T A C G T A T G C
Reverse Opposite:
A T C G C G T A C G T A C G A T A C T G A G T C C G T A A C G T C G T A A C T G A C G T A C T G C T G A
p-value:1e-14
log p-value:-3.277e+01
Information Content per bp:1.822
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets60.8 +/- 29.7bp
Average Position of motif in Background64.4 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCACTATGCATTC
-GAATATTCAT--
 A G C T A G T C G T C A T A G C A C G T G T C A A C G T C T A G A G T C C G T A C G A T A C G T A T G C
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TCACTATGCATTC---
TNNATTATGCATANNTT
 A C G T A G C T A G T C G T C A T A G C A C G T G T C A A C G T C T A G A G T C C G T A C G A T A C G T A T G C A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TCACTATGCATTC
-GHATATKCAT--
 A G C T A G T C G T C A T A G C A C G T G T C A A C G T C T A G A G T C C G T A C G A T A C G T A T G C
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TCACTATGCATTC
CTCATGAATATTCAT--
 A C G T A C G T A C G T A C G T A G C T A G T C G T C A T A G C A C G T G T C A A C G T C T A G A G T C C G T A C G A T A C G T A T G C
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TCACTATGCATTC-----
--NNCATTCATTCATNNN
 A G C T A G T C G T C A T A G C A C G T G T C A A C G T C T A G A G T C C G T A C G A T A C G T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

POU4F2/MA0683.1/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TCACTATGCATTC
CTCATTAATTATGCAT--
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T C A T A G C A C G T G T C A A C G T C T A G A G T C C G T A C G A T A C G T A T G C
A G T C G A C T T G A C T G C A A G C T G A C T C G T A C G T A C G A T G C A T C G T A C G A T C A T G G A T C C T G A G A C T A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TCACTATGCATTC--
---AGATGCAATCCC
 A G C T A G T C G T C A T A G C A C G T G T C A A C G T C T A G A G T C C G T A C G A T A C G T A T G C A C G T A C G T
A C G T A C G T A C G T T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TCACTATGCATTC
AYATGYATATGCATR-
 A C G T A C G T A C G T A G C T A G T C G T C A T A G C A C G T G T C A A C G T C T A G A G T C C G T A C G A T A C G T A T G C
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G A C G T

ZNF143/MA0088.2/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TCACTATGCATTC
TACCCACAATGCATTG
 A C G T A C G T A C G T A G C T A G T C G T C A T A G C A C G T G T C A A C G T C T A G A G T C C G T A C G A T A C G T A T G C
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TCACTATGCATTC
TTCATTTGCATAT
 A G C T A G T C G T C A T A G C A C G T G T C A A C G T C T A G A G T C C G T A C G A T A C G T A T G C
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T