Information for 8-CSGCAGRKWS (Motif 13)

A G T C A T C G A T C G T A G C C G T A A C T G T C G A A C T G G C T A A T G C
Reverse Opposite:
A T C G C G A T T G A C A G C T A G T C G C A T A T C G T A G C T A G C T C A G
p-value:1e-9
log p-value:-2.100e+01
Information Content per bp:1.520
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.68%
Number of Background Sequences with motif257.9
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets47.8 +/- 28.5bp
Average Position of motif in Background48.1 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CSGCAGRKWS
-NGAAGC---
 A G T C A T C G A T C G T A G C C G T A A C T G T C G A A C T G G C T A A T G C
A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CSGCAGRKWS
-CACAGN---
 A G T C A T C G A T C G T A G C C G T A A C T G T C G A A C T G G C T A A T G C
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CSGCAGRKWS
CAGCTGNT--
 A G T C A T C G A T C G T A G C C G T A A C T G T C G A A C T G G C T A A T G C
G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CSGCAGRKWS
CACAGCAGGGGG
 A C G T A C G T A G T C A T C G A T C G T A G C C G T A A C T G T C G A A C T G G C T A A T G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CSGCAGRKWS--
SDGCAGGTGCNS
 A G T C A T C G A T C G T A G C C G T A A C T G T C G A A C T G G C T A A T G C A C G T A C G T
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CSGCAGRKWS--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A G T C A T C G A T C G T A G C C G T A A C T G T C G A A C T G G C T A A T G C A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0150.1_Mybl1_2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CSGCAGRKWS---
CACGGCAGTTGGTNN
 A C G T A C G T A G T C A T C G A T C G T A G C C G T A A C T G T C G A A C T G G C T A A T G C A C G T A C G T A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CSGCAGRKWS
CCTGCTGAGH-
 A C G T A G T C A T C G A T C G T A G C C G T A A C T G T C G A A C T G G C T A A T G C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CSGCAGRKWS---
NNNTGGCAGTTGGTNN
 A C G T A C G T A C G T A G T C A T C G A T C G T A G C C G T A A C T G T C G A A C T G G C T A A T G C A C G T A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CSGCAGRKWS
--CCAGACAG
 A G T C A T C G A T C G T A G C C G T A A C T G T C G A A C T G G C T A A T G C
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G