Information for 6-GACAGCAAGG (Motif 9)

A C T G C G T A A T G C C G T A T C A G T A G C G C T A C T G A C A T G C T A G
Reverse Opposite:
A G T C G T A C A G C T C G A T A T C G A G T C G C A T A T C G G C A T G T A C
p-value:1e-9
log p-value:-2.140e+01
Information Content per bp:1.820
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif2.99%
Number of Background Sequences with motif318.6
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets52.4 +/- 28.7bp
Average Position of motif in Background50.3 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS2/MA0774.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GACAGCAAGG
TTGACAGC----
 A C G T A C G T A C T G C G T A A T G C C G T A T C A G T A G C G C T A C T G A C A T G C T A G
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GACAGCAAGG--
CACAGCAGGGGG
 A C T G C G T A A T G C C G T A T C A G T A G C G C T A C T G A C A T G C T A G A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GACAGCAAGG
AACAGGAAGT
 A C T G C G T A A T G C C G T A T C A G T A G C G C T A C T G A C A T G C T A G
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GACAGCAAGG
TTGACAGG----
 A C G T A C G T A C T G C G T A A T G C C G T A T C A G T A G C G C T A C T G A C A T G C T A G
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------GACAGCAAGG-
GATATTGACAGCTGCGT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A T G C C G T A T C A G T A G C G C T A C T G A C A T G C T A G A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GACAGCAAGG-----
-----CAAGGHCANV
 A C T G C G T A A T G C C G T A T C A G T A G C G C T A C T G A C A T G C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GACAGCAAGG-
-ACAGGAAGTG
 A C T G C G T A A T G C C G T A T C A G T A G C G C T A C T G A C A T G C T A G A C G T
A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GACAGCAAGG
TGAGTCAGCA---
 A C G T A C G T A C G T A C T G C G T A A T G C C G T A T C A G T A G C G C T A C T G A C A T G C T A G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GACAGCAAGG
CACAGN----
 A C T G C G T A A T G C C G T A T C A G T A G C G C T A C T G A C A T G C T A G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GACAGCAAGG
TTGACAG-----
 A C G T A C G T A C T G C G T A A T G C C G T A T C A G T A G C G C T A C T G A C A T G C T A G
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T