Information for 5-TGTGCATGTGGCTGAC (Motif 3)

A G C T C T A G C G A T C A T G A G T C T G C A C A G T T C A G C G A T T C A G A T C G A G T C A G C T C A T G T G C A A G T C
Reverse Opposite:
A C T G A C G T G T A C C T G A T A C G A T G C A G T C C G T A A G T C G T C A A C G T T A C G G A T C G C T A G A T C C T G A
p-value:1e-11
log p-value:-2.627e+01
Information Content per bp:1.663
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif21.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets49.5 +/- 26.2bp
Average Position of motif in Background43.6 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:1
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TGTGCATGTGGCTGAC
GGAGCTGTCCATGGTGCTGA-
 A C G T A C G T A C G T A C G T A C G T A G C T C T A G C G A T C A T G A G T C T G C A C A G T T C A G C G A T T C A G A T C G A G T C A G C T C A T G T G C A A G T C
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A A C G T

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGCATGTGGCTGAC
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A C G T A G C T C T A G C G A T C A T G A G T C T G C A C A G T T C A G C G A T T C A G A T C G A G T C A G C T C A T G T G C A A G T C
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TGTGCATGTGGCTGAC
--TGGGTGTGGC----
 A G C T C T A G C G A T C A T G A G T C T G C A C A G T T C A G C G A T T C A G A T C G A G T C A G C T C A T G T G C A A G T C
A C G T A C G T C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TGTGCATGTGGCTGAC
---GTCTGTGGTTT--
 A G C T C T A G C G A T C A T G A G T C T G C A C A G T T C A G C G A T T C A G A T C G A G T C A G C T C A T G T G C A A G T C
A C G T A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TGTGCATGTGGCTGAC
--TGCCTGAGGCN---
 A G C T C T A G C G A T C A T G A G T C T G C A C A G T T C A G C G A T T C A G A T C G A G T C A G C T C A T G T G C A A G T C
A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TGTGCATGTGGCTGAC
--NGCCTNAGGCN---
 A G C T C T A G C G A T C A T G A G T C T G C A C A G T T C A G C G A T T C A G A T C G A G T C A G C T C A T G T G C A A G T C
A C G T A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TGTGCATGTGGCTGAC
-----AATTTGCTGAC
 A G C T C T A G C G A T C A T G A G T C T G C A C A G T T C A G C G A T T C A G A T C G A G T C A G C T C A T G T G C A A G T C
A C G T A C G T A C G T A C G T A C G T C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C

Mafb/MA0117.2/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TGTGCATGTGGCTGAC-
-----AAAATGCTGACT
 A G C T C T A G C G A T C A T G A G T C T G C A C A G T T C A G C G A T T C A G A T C G A G T C A G C T C A T G T G C A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.51
Offset:-7
Orientation:reverse strand
Alignment:-------TGTGCATGTGGCTGAC
NNNNTTGTGTGCTTNN-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G C G A T C A T G A G T C T G C A C A G T T C A G C G A T T C A G A T C G A G T C A G C T C A T G T G C A A G T C
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TGTGCATGTGGCTGAC
--NGCCTGAGGCN---
 A G C T C T A G C G A T C A T G A G T C T G C A C A G T T C A G C G A T T C A G A T C G A G T C A G C T C A T G T G C A A G T C
A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G A C G T A C G T A C G T