Information for 4-AGGGGGCAGTGTTTGT (Motif 2)

C G T A A C T G C T A G C T A G A C T G A C T G A G T C C T G A A T C G A G C T A T C G A C G T A G C T A C G T A C T G A G C T
Reverse Opposite:
C T G A A G T C C G T A C T G A C G T A A T G C C T G A A T G C A G C T A C T G A G T C A G T C A G T C A G T C A G T C A C G T
p-value:1e-13
log p-value:-3.130e+01
Information Content per bp:1.907
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.4 +/- 14.2bp
Average Position of motif in Background36.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL003.1_GC-box/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGGGGCAGTGTTTGT
AGGGGGCGGGGCTG--
 C G T A A C T G C T A G C T A G A C T G A C T G A G T C C T G A A T C G A G C T A T C G A C G T A G C T A C G T A C T G A G C T
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AGGGGGCAGTGTTTGT
NNNAAGGGGGCGGGNNN---
 A C G T A C G T A C G T A C G T C G T A A C T G C T A G C T A G A C T G A C T G A G T C C T G A A T C G A G C T A T C G A C G T A G C T A C G T A C T G A G C T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AGGGGGCAGTGTTTGT
TGTCAGGGGGCG--------
 A C G T A C G T A C G T A C G T C G T A A C T G C T A G C T A G A C T G A C T G A G T C C T G A A T C G A G C T A T C G A C G T A G C T A C G T A C T G A G C T
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:AGGGGGCAGTGTTTGT
-----GCAGTGATTT-
 C G T A A C T G C T A G C T A G A C T G A C T G A G T C C T G A A T C G A G C T A T C G A C G T A G C T A C G T A C T G A G C T
A C G T A C G T A C G T A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.58
Offset:-8
Orientation:reverse strand
Alignment:--------AGGGGGCAGTGTTTGT
TGGCCACCAGGTGGCACTNT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C T A G C T A G A C T G A C T G A G T C C T G A A T C G A G C T A T C G A C G T A G C T A C G T A C T G A G C T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------AGGGGGCAGTGTTTGT
GCCASCAGGGGGCGCYVNNG--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C T A G C T A G A C T G A C T G A G T C C T G A A T C G A G C T A T C G A C G T A G C T A C G T A C T G A G C T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGGGGCAGTGTTTGT
AGGVNCCTTTGT----
 C G T A A C T G C T A G C T A G A C T G A C T G A G T C C T G A A T C G A G C T A T C G A C G T A G C T A C G T A C T G A G C T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T

SP4/MA0685.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGGGGGCAGTGTTTGT
NAAGGGGGCGTGGCTTN-
 A C G T A C G T C G T A A C T G C T A G C T A G A C T G A C T G A G T C C T G A A T C G A G C T A T C G A C G T A G C T A C G T A C T G A G C T
C T G A C T G A C G T A C T A G C A T G T C A G A C T G A T C G T G A C A C T G A C G T T C A G C A T G G A T C G A C T C G A T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:9
Score:0.55
Offset:-8
Orientation:forward strand
Alignment:--------AGGGGGCAGTGTTTGT
TGGCCACCAGGGGGCGCTA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C T A G C T A G A C T G A C T G A G T C C T G A A T C G A G C T A T C G A C G T A G C T A C G T A C T G A G C T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGGGGGCAGTGTTTGT
NNNNTGAGCACTGTNNG-
 A C G T A C G T C G T A A C T G C T A G C T A G A C T G A C T G A G T C C T G A A T C G A G C T A T C G A C G T A G C T A C G T A C T G A G C T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G A C G T