Information for 18-GGAGAATTAACAT (Motif 21)

A C T G A C T G C G T A A T C G G T C A C T G A C G A T A C G T C G T A G T C A G T A C C G T A A C G T
Reverse Opposite:
G T C A C G A T A C T G A C G T C G A T C G T A C G T A A G C T A C G T A T G C A C G T A G T C G T A C
p-value:1e-9
log p-value:-2.248e+01
Information Content per bp:1.820
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.0 +/- 29.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GGAGAATTAACAT-
--BTVATTWGCATA
 A C T G A C T G C G T A A T C G G T C A C T G A C G A T A C G T C G T A G T C A G T A C C G T A A C G T A C G T
A C G T A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

POU3F1/MA0786.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GGAGAATTAACAT--
---TAATTTGCATAA
 A C T G A C T G C G T A A T C G G T C A C T G A C G A T A C G T C G T A G T C A G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A

POU5F1B/MA0792.1/Jaspar

Match Rank:3
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GGAGAATTAACAT-
-----ATTTGCATA
 A C T G A C T G C G T A A T C G G T C A C T G A C G A T A C G T C G T A G T C A G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

POU2F1/MA0785.1/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGAGAATTAACAT---
----AATTTGCATANT
 A C T G A C T G C G T A A T C G G T C A C T G A C G A T A C G T C G T A G T C A G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

POU3F2/MA0787.1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GGAGAATTAACAT--
---TAATTTGCATAA
 A C T G A C T G C G T A A T C G G T C A C T G A C G A T A C G T C G T A G T C A G T A C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

POU3F3/MA0788.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGAGAATTAACAT---
---AAATTAGCATAAT
 A C T G A C T G C G T A A T C G G T C A C T G A C G A T A C G T C G T A G T C A G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GGAGAATTAACAT-
-----ATTTGCATA
 A C T G A C T G C G T A A T C G G T C A C T G A C G A T A C G T C G T A G T C A G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGAGAATTAACAT-
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C T G A C T G C G T A A T C G G T C A C T G A C G A T A C G T C G T A G T C A G T A C C G T A A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

PB0109.1_Bbx_2/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGAGAATTAACAT----
TGATTGTTAACAGTTGG
 A C T G A C T G C G T A A T C G G T C A C T G A C G A T A C G T C G T A G T C A G T A C C G T A A C G T A C G T A C G T A C G T A C G T
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

Arid3b/MA0601.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGAGAATTAACAT
--NTAATTAATAT
 A C T G A C T G C G T A A T C G G T C A C T G A C G A T A C G T C G T A G T C A G T A C C G T A A C G T
A C G T A C G T A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T