Information for 2-RGCGTCCTCKGGGTGA (Motif 3)

T C G A T A C G A G T C C T A G G A C T A G T C A G T C C G A T A T G C A C T G A C T G A C T G A C T G A C G T C T A G G T C A
Reverse Opposite:
A C G T A G T C C G T A A G T C G T A C A G T C T G A C A T C G C G T A C T A G A C T G C T G A G A T C T C A G A T G C A G C T
p-value:1e-12
log p-value:-2.811e+01
Information Content per bp:1.721
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.8 +/- 16.8bp
Average Position of motif in Background45.2 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:RGCGTCCTCKGGGTGA
----TCCCCTGGGGAC
 T C G A T A C G A G T C C T A G G A C T A G T C A G T C C G A T A T G C A C T G A C T G A C T G A C T G A C G T C T A G G T C A
A C G T A C G T A C G T A C G T A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RGCGTCCTCKGGGTGA
--TGCCCTGAGGGCA-
 T C G A T A C G A G T C C T A G G A C T A G T C A G T C C G A T A T G C A C T G A C T G A C T G A C T G A C G T C T A G G T C A
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RGCGTCCTCKGGGTGA
--TGCCCTGAGGGCA-
 T C G A T A C G A G T C C T A G G A C T A G T C A G T C C G A T A T G C A C T G A C T G A C T G A C T G A C G T C T A G G T C A
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T

HINFP/MA0131.2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-RGCGTCCTCKGGGTGA
CAACGTCCGCGG-----
 A C G T T C G A T A C G A G T C C T A G G A C T A G T C A G T C C G A T A T G C A C T G A C T G A C T G A C T G A C G T C T A G G T C A
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:RGCGTCCTCKGGGTGA
--TGCCCTNAGGGCA-
 T C G A T A C G A G T C C T A G G A C T A G T C A G T C C G A T A T G C A C T G A C T G A C T G A C T G A C G T C T A G G T C A
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:RGCGTCCTCKGGGTGA
----TCCCNNGGGACN
 T C G A T A C G A G T C C T A G G A C T A G T C A G T C C G A T A T G C A C T G A C T G A C T G A C T G A C G T C T A G G T C A
A C G T A C G T A C G T A C G T G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RGCGTCCTCKGGGTGA
-WTGSCCTSAGGS---
 T C G A T A C G A G T C C T A G G A C T A G T C A G T C C G A T A T G C A C T G A C T G A C T G A C T G A C G T C T A G G T C A
A C G T G C T A G A C T C A T G A T G C A G T C A G T C G A C T T A C G C T G A C T A G A C T G T A G C A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RGCGTCCTCKGGGTGA
-NTGCCCANNGGTNA-
 T C G A T A C G A G T C C T A G G A C T A G T C A G T C C G A T A T G C A C T G A C T G A C T G A C T G A C G T C T A G G T C A
A C G T T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:RGCGTCCTCKGGGTGA
-ATGCCCTGAGGC---
 T C G A T A C G A G T C C T A G G A C T A G T C A G T C C G A T A T G C A C T G A C T G A C T G A C T G A C G T C T A G G T C A
A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C A C G T A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:RGCGTCCTCKGGGTGA-
--CCCCCCCGGGGGGGT
 T C G A T A C G A G T C C T A G G A C T A G T C A G T C C G A T A T G C A C T G A C T G A C T G A C T G A C G T C T A G G T C A A C G T
A C G T A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T