Information for 11-TGAACCCATTGTCACT (Motif 17)

A C G T A C T G T G C A C T G A G T A C G T A C G T A C C G T A A G C T A C G T C T A G A C G T A T G C C G T A G T A C A G C T
Reverse Opposite:
C T G A C A T G A C G T A T C G C G T A G A T C G T C A C T G A A C G T C A T G A C T G A C T G A G C T A C G T A G T C C G T A
p-value:1e-9
log p-value:-2.150e+01
Information Content per bp:1.764
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.0 +/- 28.2bp
Average Position of motif in Background20.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGAACCCATTGTCACT-
TGTTCCCATTGTGTACT
 A C G T A C T G T G C A C T G A G T A C G T A C G T A C C G T A A G C T A C G T C T A G A C G T A T G C C G T A G T A C A G C T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TGAACCCATTGTCACT
----CTCATTGTC---
 A C G T A C T G T G C A C T G A G T A C G T A C G T A C C G T A A G C T A C G T C T A G A C G T A T G C C G T A G T A C A G C T
A C G T A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGAACCCATTGTCACT-
BTGACCTCTNNHTGACCY
 A C G T A C G T A C T G T G C A C T G A G T A C G T A C G T A C C G T A A G C T A C G T C T A G A C G T A T G C C G T A G T A C A G C T A C G T
A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGAACCCATTGTCACT-
TGACCTCTCNNTGACCT
 A C G T A C T G T G C A C T G A G T A C G T A C G T A C C G T A A G C T A C G T C T A G A C G T A T G C C G T A G T A C A G C T A C G T
G A C T T A C G G T C A T G A C A G T C A C G T A T G C G A C T A G T C A T G C T C A G A G C T T A C G G T C A G T A C A G T C A G C T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TGAACCCATTGTCACT
AGGVNCCTTTGT----
 A C G T A C T G T G C A C T G A G T A C G T A C G T A C C G T A A G C T A C G T C T A G A C G T A T G C C G T A G T A C A G C T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TGAACCCATTGTCACT
-----CCTTTGTT---
 A C G T A C T G T G C A C T G A G T A C G T A C G T A C C G T A A G C T A C G T C T A G A C G T A T G C C G T A G T A C A G C T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TGAACCCATTGTCACT
-----CCATTGTTYB-
 A C G T A C T G T G C A C T G A G T A C G T A C G T A C C G T A A G C T A C G T C T A G A C G T A T G C C G T A G T A C A G C T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----TGAACCCATTGTCACT
TGTCGTGACCCCTTAAT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T G C A C T G A G T A C G T A C G T A C C G T A A G C T A C G T C T A G A C G T A T G C C G T A G T A C A G C T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.50
Offset:5
Orientation:forward strand
Alignment:TGAACCCATTGTCACT
-----CCWTTGTY---
 A C G T A C T G T G C A C T G A G T A C G T A C G T A C C G T A A G C T A C G T C T A G A C G T A T G C C G T A G T A C A G C T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:TGAACCCATTGTCACT
--------NTGTCAN-
 A C G T A C T G T G C A C T G A G T A C G T A C G T A C C G T A A G C T A C G T C T A G A C G T A T G C C G T A G T A C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T